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Items: 1 to 20 of 150

1.

Using the iPlant collaborative discovery environment.

Oliver SL, Lenards AJ, Barthelson RA, Merchant N, McKay SJ.

Curr Protoc Bioinformatics. 2013 Jun;Chapter 1:Unit1.22. doi: 10.1002/0471250953.bi0122s42.

PMID:
23749752
2.

The iPlant Collaborative: Cyberinfrastructure for Enabling Data to Discovery for the Life Sciences.

Merchant N, Lyons E, Goff S, Vaughn M, Ware D, Micklos D, Antin P.

PLoS Biol. 2016 Jan 11;14(1):e1002342. doi: 10.1371/journal.pbio.1002342. eCollection 2016 Jan.

3.

The iPlant Collaborative: Cyberinfrastructure for Plant Biology.

Goff SA, Vaughn M, McKay S, Lyons E, Stapleton AE, Gessler D, Matasci N, Wang L, Hanlon M, Lenards A, Muir A, Merchant N, Lowry S, Mock S, Helmke M, Kubach A, Narro M, Hopkins N, Micklos D, Hilgert U, Gonzales M, Jordan C, Skidmore E, Dooley R, Cazes J, McLay R, Lu Z, Pasternak S, Koesterke L, Piel WH, Grene R, Noutsos C, Gendler K, Feng X, Tang C, Lent M, Kim SJ, Kvilekval K, Manjunath BS, Tannen V, Stamatakis A, Sanderson M, Welch SM, Cranston KA, Soltis P, Soltis D, O'Meara B, Ane C, Brutnell T, Kleibenstein DJ, White JW, Leebens-Mack J, Donoghue MJ, Spalding EP, Vision TJ, Myers CR, Lowenthal D, Enquist BJ, Boyle B, Akoglu A, Andrews G, Ram S, Ware D, Stein L, Stanzione D.

Front Plant Sci. 2011 Jul 25;2:34. doi: 10.3389/fpls.2011.00034. eCollection 2011.

4.

Applications of the pipeline environment for visual informatics and genomics computations.

Dinov ID, Torri F, Macciardi F, Petrosyan P, Liu Z, Zamanyan A, Eggert P, Pierce J, Genco A, Knowles JA, Clark AP, Van Horn JD, Ames J, Kesselman C, Toga AW.

BMC Bioinformatics. 2011 Jul 26;12:304. doi: 10.1186/1471-2105-12-304.

5.

Taverna: a tool for the composition and enactment of bioinformatics workflows.

Oinn T, Addis M, Ferris J, Marvin D, Senger M, Greenwood M, Carver T, Glover K, Pocock MR, Wipat A, Li P.

Bioinformatics. 2004 Nov 22;20(17):3045-54. Epub 2004 Jun 16.

PMID:
15201187
6.

Biowep: a workflow enactment portal for bioinformatics applications.

Romano P, Bartocci E, Bertolini G, De Paoli F, Marra D, Mauri G, Merelli E, Milanesi L.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S19.

7.

Data mining with iPlant: a meeting report from the 2013 GARNet workshop, Data mining with iPlant.

Martin L, Cook C, Matasci N, Williams J, Bastow R.

J Exp Bot. 2015 Jan;66(1):1-6. doi: 10.1093/jxb/eru402. Epub 2014 Oct 17.

PMID:
25326627
8.

CaGrid Workflow Toolkit: a Taverna based workflow tool for cancer grid.

Tan W, Madduri R, Nenadic A, Soiland-Reyes S, Sulakhe D, Foster I, Goble CA.

BMC Bioinformatics. 2010 Nov 2;11:542. doi: 10.1186/1471-2105-11-542.

9.

BAAQ: an infrastructure for application integration and knowledge discovery in bioinformatics.

Gong X, Nakamura K, Yu H, Yura K, Go N.

IEEE Trans Inf Technol Biomed. 2007 Jul;11(4):428-34.

PMID:
17674625
10.

Jflow: a workflow management system for web applications.

Mariette J, Escudié F, Bardou P, Nabihoudine I, Noirot C, Trotard MS, Gaspin C, Klopp C.

Bioinformatics. 2016 Feb 1;32(3):456-8. doi: 10.1093/bioinformatics/btv589. Epub 2015 Oct 10.

PMID:
26454273
11.

BioWMS: a web-based Workflow Management System for bioinformatics.

Bartocci E, Corradini F, Merelli E, Scortichini L.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S2.

12.

FLOSYS--a web-accessible workflow system for protocol-driven biomolecular sequence analysis.

Badidi E, Lang BF, Burger G.

Cell Mol Biol (Noisy-le-grand). 2004 Nov;50(7):785-93.

PMID:
15672461
13.

Workflow based framework for life science informatics.

Tiwari A, Sekhar AK.

Comput Biol Chem. 2007 Oct;31(5-6):305-19. Epub 2007 Aug 19. Review.

PMID:
17931570
14.

Ergatis: a web interface and scalable software system for bioinformatics workflows.

Orvis J, Crabtree J, Galens K, Gussman A, Inman JM, Lee E, Nampally S, Riley D, Sundaram JP, Felix V, Whitty B, Mahurkar A, Wortman J, White O, Angiuoli SV.

Bioinformatics. 2010 Jun 15;26(12):1488-92. doi: 10.1093/bioinformatics/btq167. Epub 2010 Apr 22.

15.

CoGenT++: an extensive and extensible data environment for computational genomics.

Goldovsky L, Janssen P, Ahrén D, Audit B, Cases I, Darzentas N, Enright AJ, López-Bigas N, Peregrin-Alvarez JM, Smith M, Tsoka S, Kunin V, Ouzounis CA.

Bioinformatics. 2005 Oct 1;21(19):3806-10.

PMID:
16216832
16.

JMS: An Open Source Workflow Management System and Web-Based Cluster Front-End for High Performance Computing.

Brown DK, Penkler DL, Musyoka TM, Bishop ÖT.

PLoS One. 2015 Aug 17;10(8):e0134273. doi: 10.1371/journal.pone.0134273. eCollection 2015.

17.

MBAT: a scalable informatics system for unifying digital atlasing workflows.

Lee D, Ruffins S, Ng Q, Sane N, Anderson S, Toga A.

BMC Bioinformatics. 2010 Dec 22;11:608. doi: 10.1186/1471-2105-11-608.

18.

High performance workflow implementation for protein surface characterization using grid technology.

Merelli I, Morra G, D'Agostino D, Clematis A, Milanesi L.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S19.

19.

KDE Bioscience: platform for bioinformatics analysis workflows.

Lu Q, Hao P, Curcin V, He W, Li YY, Luo QM, Guo YK, Li YX.

J Biomed Inform. 2006 Aug;39(4):440-50. Epub 2005 Oct 11.

20.

Phylogenetic analysis with the iPlant discovery environment.

Matasci N, McKay S.

Curr Protoc Bioinformatics. 2013 Jun;Chapter 6:Unit6.13. doi: 10.1002/0471250953.bi0613s42.

PMID:
23749754

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