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Items: 1 to 20 of 113

1.

ATHLATES: accurate typing of human leukocyte antigen through exome sequencing.

Liu C, Yang X, Duffy B, Mohanakumar T, Mitra RD, Zody MC, Pfeifer JD.

Nucleic Acids Res. 2013 Aug;41(14):e142. doi: 10.1093/nar/gkt481. Epub 2013 Jun 8.

2.

HLA typing from 1000 genomes whole genome and whole exome illumina data.

Major E, Rigó K, Hague T, Bérces A, Juhos S.

PLoS One. 2013 Nov 6;8(11):e78410. doi: 10.1371/journal.pone.0078410. eCollection 2013.

3.

HLAscan: genotyping of the HLA region using next-generation sequencing data.

Ka S, Lee S, Hong J, Cho Y, Sung J, Kim HN, Kim HL, Jung J.

BMC Bioinformatics. 2017 May 12;18(1):258. doi: 10.1186/s12859-017-1671-3.

4.

Determining performance characteristics of an NGS-based HLA typing method for clinical applications.

Duke JL, Lind C, Mackiewicz K, Ferriola D, Papazoglou A, Gasiewski A, Heron S, Huynh A, McLaughlin L, Rogers M, Slavich L, Walker R, Monos DS.

HLA. 2016 Mar;87(3):141-52. doi: 10.1111/tan.12736. Epub 2016 Feb 16.

PMID:
26880737
5.

HLA typing by next-generation sequencing - getting closer to reality.

Gabriel C, Fürst D, Faé I, Wenda S, Zollikofer C, Mytilineos J, Fischer GF.

Tissue Antigens. 2014 Feb;83(2):65-75. doi: 10.1111/tan.12298. Review.

PMID:
24447174
6.

High-resolution, high-throughput HLA genotyping by next-generation sequencing.

Bentley G, Higuchi R, Hoglund B, Goodridge D, Sayer D, Trachtenberg EA, Erlich HA.

Tissue Antigens. 2009 Nov;74(5):393-403. doi: 10.1111/j.1399-0039.2009.01345.x.

7.

Five-locus HLA typing of hematopoietic stem cell donor volunteers using PCR sequence specific primers.

Downing J, Guttridge MG, Thompson J, Darke C.

Genet Test. 2004 Fall;8(3):301-12.

PMID:
15727255
8.

HLA-VBSeq: accurate HLA typing at full resolution from whole-genome sequencing data.

Nariai N, Kojima K, Saito S, Mimori T, Sato Y, Kawai Y, Yamaguchi-Kabata Y, Yasuda J, Nagasaki M.

BMC Genomics. 2015;16 Suppl 2:S7. doi: 10.1186/1471-2164-16-S2-S7. Epub 2015 Jan 21.

9.

Development of a high-resolution NGS-based HLA-typing and analysis pipeline.

Wittig M, Anmarkrud JA, Kässens JC, Koch S, Forster M, Ellinghaus E, Hov JR, Sauer S, Schimmler M, Ziemann M, Görg S, Jacob F, Karlsen TH, Franke A.

Nucleic Acids Res. 2015 Jun 23;43(11):e70. doi: 10.1093/nar/gkv184. Epub 2015 Mar 9.

10.

OptiType: precision HLA typing from next-generation sequencing data.

Szolek A, Schubert B, Mohr C, Sturm M, Feldhahn M, Kohlbacher O.

Bioinformatics. 2014 Dec 1;30(23):3310-6. doi: 10.1093/bioinformatics/btu548. Epub 2014 Aug 20.

11.

Performance Characteristics and Validation of Next-Generation Sequencing for Human Leucocyte Antigen Typing.

Weimer ET, Montgomery M, Petraroia R, Crawford J, Schmitz JL.

J Mol Diagn. 2016 Sep;18(5):668-675. doi: 10.1016/j.jmoldx.2016.03.009. Epub 2016 Jul 1.

PMID:
27376474
12.

A group-specific sequencing approach to investigate the presence of atypical human leucocyte antigen alleles.

Foster L, Tate D, Poulton K.

Int J Immunogenet. 2013 Dec;40(6):453-9. doi: 10.1111/iji.12070. Epub 2013 May 31.

PMID:
23724946
13.

A multi-site study using high-resolution HLA genotyping by next generation sequencing.

Holcomb CL, Höglund B, Anderson MW, Blake LA, Böhme I, Egholm M, Ferriola D, Gabriel C, Gelber SE, Goodridge D, Hawbecker S, Klein R, Ladner M, Lind C, Monos D, Pando MJ, Pröll J, Sayer DC, Schmitz-Agheguian G, Simen BB, Thiele B, Trachtenberg EA, Tyan DB, Wassmuth R, White S, Erlich HA.

Tissue Antigens. 2011 Mar;77(3):206-17. doi: 10.1111/j.1399-0039.2010.01606.x.

14.

[Probability of high resolution full match for human leukocyte antigen loci in unrelated donors and recipients with low resolution match].

Zhang W, Zhu FM, He YM, Tao SD, Wang W, He JJ, Lü HJ, Yan LX.

Zhongguo Shi Yan Xue Ye Xue Za Zhi. 2010 Dec;18(6):1617-20. Chinese.

PMID:
21176382
15.

Targeted Next-Generation Sequencing for Human Leukocyte Antigen Typing in a Clinical Laboratory: Metrics of Relevance and Considerations for Its Successful Implementation.

Gandhi MJ, Ferriola D, Huang Y, Duke JL, Monos D.

Arch Pathol Lab Med. 2017 Jun;141(6):806-812. doi: 10.5858/arpa.2016-0537-RA. Epub 2017 Feb 24.

PMID:
28234015
16.

[Human leukocyte antigen typing proficiency surveys in Korea, 2005-2006].

Kim MH, Choi SE, Oh HB.

Korean J Lab Med. 2007 Dec;27(6):442-50. Korean.

17.
18.

Rapid high-throughput human leukocyte antigen typing by massively parallel pyrosequencing for high-resolution allele identification.

Gabriel C, Danzer M, Hackl C, Kopal G, Hufnagl P, Hofer K, Polin H, Stabentheiner S, Pröll J.

Hum Immunol. 2009 Nov;70(11):960-4. doi: 10.1016/j.humimm.2009.08.009. Epub 2009 Aug 23.

PMID:
19706315
19.

Pyrosequencing-based strategies for improved allele typing of human leukocyte antigen loci.

Ringquist S, Styche A, Rudert WA, Trucco M.

Methods Mol Biol. 2007;373:115-34.

PMID:
17185762
20.

HLA typing by direct DNA sequencing.

Smith LK.

Methods Mol Biol. 2012;882:67-86. doi: 10.1007/978-1-61779-842-9_5.

PMID:
22665229

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