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Items: 1 to 20 of 128

1.

Bayesian analysis of biogeography when the number of areas is large.

Landis MJ, Matzke NJ, Moore BR, Huelsenbeck JP.

Syst Biol. 2013 Nov;62(6):789-804. doi: 10.1093/sysbio/syt040. Epub 2013 Jun 4.

2.

A likelihood framework for inferring the evolution of geographic range on phylogenetic trees.

Ree RH, Moore BR, Webb CO, Donoghue MJ.

Evolution. 2005 Nov;59(11):2299-311.

PMID:
16396171
3.

Inferring geographic range evolution of a pantropical tribe in the coffee family (Lasiantheae, Rubiaceae) in the face of topological uncertainty.

Smedmark JE, Razafimandimbison SG, Wikström N, Bremer B.

Mol Phylogenet Evol. 2014 Jan;70:182-94. doi: 10.1016/j.ympev.2013.09.007. Epub 2013 Sep 19.

PMID:
24055546
4.

Bayesian gene/species tree reconciliation and orthology analysis using MCMC.

Arvestad L, Berglund AC, Lagergren J, Sennblad B.

Bioinformatics. 2003;19 Suppl 1:i7-15.

PMID:
12855432
5.

Bayesian estimation of the phylogeography of African gorillas with genome-differentiated population trees.

Kim J, Larget B.

Biometrics. 2014 Sep;70(3):683-94. doi: 10.1111/biom.12169. Epub 2014 Apr 18.

PMID:
24750097
6.

Historical Biogeography Using Species Geographical Ranges.

Quintero I, Keil P, Jetz W, Crawford FW.

Syst Biol. 2015 Nov;64(6):1059-73. doi: 10.1093/sysbio/syv057. Epub 2015 Aug 8.

7.

Fossil biogeography: a new model to infer dispersal, extinction and sampling from palaeontological data.

Silvestro D, Zizka A, Bacon CD, Cascales-Miñana B, Salamin N, Antonelli A.

Philos Trans R Soc Lond B Biol Sci. 2016 Apr 5;371(1691):20150225. doi: 10.1098/rstb.2015.0225.

8.

Model selection in statistical historical biogeography of Neotropical insects-The Exophthalmus genus complex (Curculionidae: Entiminae).

Zhang G, Basharat U, Matzke N, Franz NM.

Mol Phylogenet Evol. 2017 Apr;109:226-239. doi: 10.1016/j.ympev.2016.12.039. Epub 2017 Jan 3.

PMID:
28057552
9.

Bayesian coestimation of phylogeny and sequence alignment.

Lunter G, Miklós I, Drummond A, Jensen JL, Hein J.

BMC Bioinformatics. 2005 Apr 1;6:83.

10.

Improved reversible jump algorithms for Bayesian species delimitation.

Rannala B, Yang Z.

Genetics. 2013 May;194(1):245-53. doi: 10.1534/genetics.112.149039. Epub 2013 Mar 15.

11.

Maximum likelihood inference of geographic range evolution by dispersal, local extinction, and cladogenesis.

Ree RH, Smith SA.

Syst Biol. 2008 Feb;57(1):4-14. doi: 10.1080/10635150701883881.

PMID:
18253896
12.

A comparative study in ancestral range reconstruction methods: retracing the uncertain histories of insular lineages.

Clark JR, Ree RH, Alfaro ME, King MG, Wagner WL, Roalson EH.

Syst Biol. 2008 Oct;57(5):693-707. doi: 10.1080/10635150802426473.

PMID:
18853357
13.

Species delimitation using genome-wide SNP data.

Leaché AD, Fujita MK, Minin VN, Bouckaert RR.

Syst Biol. 2014 Jul;63(4):534-42. doi: 10.1093/sysbio/syu018. Epub 2014 Mar 12.

14.

Identifiability of parameters in MCMC Bayesian inference of phylogeny.

Rannala B.

Syst Biol. 2002 Oct;51(5):754-60.

PMID:
12396589
15.

Unguided species delimitation using DNA sequence data from multiple Loci.

Yang Z, Rannala B.

Mol Biol Evol. 2014 Dec;31(12):3125-35. doi: 10.1093/molbev/msu279. Epub 2014 Oct 1.

16.

Guided tree topology proposals for Bayesian phylogenetic inference.

Höhna S, Drummond AJ.

Syst Biol. 2012 Jan;61(1):1-11. doi: 10.1093/sysbio/syr074. Epub 2011 Aug 9.

PMID:
21828081
17.

Bayesian phylogenetic inference using DNA sequences: a Markov Chain Monte Carlo Method.

Yang Z, Rannala B.

Mol Biol Evol. 1997 Jul;14(7):717-24.

PMID:
9214744
18.
19.

Phylogeny, divergence times, and historical biogeography of New World Dryopteris (Dryopteridaceae).

Sessa EB, Zimmer EA, Givnish TJ.

Am J Bot. 2012 Apr;99(4):730-50. doi: 10.3732/ajb.1100294. Epub 2012 Mar 20.

20.

Polytomies and Bayesian phylogenetic inference.

Lewis PO, Holder MT, Holsinger KE.

Syst Biol. 2005 Apr;54(2):241-53.

PMID:
16012095

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