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Items: 1 to 20 of 71

1.

On an infrastructure to support sharing and aggregating pre- and post-publication systems biology research data.

Slaymaker M, Osborne J, Simpson A, Gavaghan D.

Syst Synth Biol. 2012 Jun;6(1-2):35-49. doi: 10.1007/s11693-012-9095-x. Epub 2012 Aug 3.

2.

The project data sphere initiative: accelerating cancer research by sharing data.

Green AK, Reeder-Hayes KE, Corty RW, Basch E, Milowsky MI, Dusetzina SB, Bennett AV, Wood WA.

Oncologist. 2015 May;20(5):464-e20. doi: 10.1634/theoncologist.2014-0431. Epub 2015 Apr 15.

4.

Data management strategies for multinational large-scale systems biology projects.

Wruck W, Peuker M, Regenbrecht CR.

Brief Bioinform. 2014 Jan;15(1):65-78. doi: 10.1093/bib/bbs064. Epub 2012 Oct 9. Review.

5.

A response to Rome: lessons from pre- and post-publication data-sharing in the C. elegans research community.

Voell MR, Farris L, Levy E, Marden E.

BMC Genomics. 2010 Dec 16;11:708. doi: 10.1186/1471-2164-11-708.

6.

The NCI All Ireland Cancer Conference.

Johnston PG, Daly PA, Liu E.

Oncologist. 1999;4(4):275-277.

7.

Security and privacy requirements for a multi-institutional cancer research data grid: an interview-based study.

Manion FJ, Robbins RJ, Weems WA, Crowley RS.

BMC Med Inform Decis Mak. 2009 Jun 15;9:31. doi: 10.1186/1472-6947-9-31.

8.

Proceedings of the Second Workshop on Theory meets Industry (Erwin-Schrödinger-Institute (ESI), Vienna, Austria, 12-14 June 2007).

Hafner J.

J Phys Condens Matter. 2008 Feb 13;20(6):060301. doi: 10.1088/0953-8984/20/06/060301. Epub 2008 Jan 24.

PMID:
21693862
9.

The value of FDG positron emission tomography/computerised tomography (PET/CT) in pre-operative staging of colorectal cancer: a systematic review and economic evaluation.

Brush J, Boyd K, Chappell F, Crawford F, Dozier M, Fenwick E, Glanville J, McIntosh H, Renehan A, Weller D, Dunlop M.

Health Technol Assess. 2011 Sep;15(35):1-192, iii-iv. doi: 10.3310/hta15350. Review.

10.

SEEK: a systems biology data and model management platform.

Wolstencroft K, Owen S, Krebs O, Nguyen Q, Stanford NJ, Golebiewski M, Weidemann A, Bittkowski M, An L, Shockley D, Snoep JL, Mueller W, Goble C.

BMC Syst Biol. 2015 Jul 11;9:33. doi: 10.1186/s12918-015-0174-y.

11.

SysBioMed report: advancing systems biology for medical applications.

Wolkenhauer O, Fell D, De Meyts P, Blüthgen N, Herzel H, Le Novère N, Höfer T, Schürrle K, van Leeuwen I.

IET Syst Biol. 2009 May;3(3):131-6. doi: 10.1049/iet-syb.2009.0005.

PMID:
19449974
12.

Enabling public data sharing: encouraging scientific discovery and education.

Fennema-Notestine C.

Methods Mol Biol. 2009;569:25-32. doi: 10.1007/978-1-59745-524-4_2.

PMID:
19623484
13.

CaGrid Workflow Toolkit: a Taverna based workflow tool for cancer grid.

Tan W, Madduri R, Nenadic A, Soiland-Reyes S, Sulakhe D, Foster I, Goble CA.

BMC Bioinformatics. 2010 Nov 2;11:542. doi: 10.1186/1471-2105-11-542.

14.
15.

Reproducible computational biology experiments with SED-ML--the Simulation Experiment Description Markup Language.

Waltemath D, Adams R, Bergmann FT, Hucka M, Kolpakov F, Miller AK, Moraru II, Nickerson D, Sahle S, Snoep JL, Le Novère N.

BMC Syst Biol. 2011 Dec 15;5:198. doi: 10.1186/1752-0509-5-198.

16.

Making open data work for plant scientists.

Leonelli S, Smirnoff N, Moore J, Cook C, Bastow R.

J Exp Bot. 2013 Nov;64(14):4109-17. doi: 10.1093/jxb/ert273. Epub 2013 Sep 16.

17.

Publication bias in laboratory animal research: a survey on magnitude, drivers, consequences and potential solutions.

ter Riet G, Korevaar DA, Leenaars M, Sterk PJ, Van Noorden CJ, Bouter LM, Lutter R, Elferink RP, Hooft L.

PLoS One. 2012;7(9):e43404. doi: 10.1371/journal.pone.0043404. Epub 2012 Sep 5.

18.

The Quixote project: Collaborative and Open Quantum Chemistry data management in the Internet age.

Adams S, de Castro P, Echenique P, Estrada J, Hanwell MD, Murray-Rust P, Sherwood P, Thomas J, Townsend J.

J Cheminform. 2011 Oct 14;3:38. doi: 10.1186/1758-2946-3-38.

19.

Recording human electrocorticographic (ECoG) signals for neuroscientific research and real-time functional cortical mapping.

Hill NJ, Gupta D, Brunner P, Gunduz A, Adamo MA, Ritaccio A, Schalk G.

J Vis Exp. 2012 Jun 26;(64). pii: 3993. doi: 10.3791/3993.

20.

Federated ontology-based queries over cancer data.

González-Beltrán A, Tagger B, Finkelstein A.

BMC Bioinformatics. 2012 Jan 25;13 Suppl 1:S9. doi: 10.1186/1471-2105-13-S1-S9.

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