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Items: 1 to 20 of 79

1.
2.

Estimation of population allele frequencies from next-generation sequencing data: pool-versus individual-based genotyping.

Gautier M, Foucaud J, Gharbi K, Cézard T, Galan M, Loiseau A, Thomson M, Pudlo P, Kerdelhué C, Estoup A.

Mol Ecol. 2013 Jul;22(14):3766-79. doi: 10.1111/mec.12360. Epub 2013 Jun 4.

PMID:
23730833
3.
4.

Estimating allele frequency from next-generation sequencing of pooled mitochondrial DNA samples.

Wang T, Pradhan K, Ye K, Wong LJ, Rohan TE.

Front Genet. 2011 Aug 17;2:51. doi: 10.3389/fgene.2011.00051. eCollection 2011.

5.

Huvariome: a web server resource of whole genome next-generation sequencing allelic frequencies to aid in pathological candidate gene selection.

Stubbs A, McClellan EA, Horsman S, Hiltemann SD, Palli I, Nouwens S, Koning AH, Hoogland F, Reumers J, Heijsman D, Swagemakers S, Kremer A, Meijerink J, Lambrechts D, van der Spek PJ.

J Clin Bioinforma. 2012 Nov 19;2(1):19. doi: 10.1186/2043-9113-2-19.

6.

Biases and errors on allele frequency estimation and disease association tests of next-generation sequencing of pooled samples.

Chen X, Listman JB, Slack FJ, Gelernter J, Zhao H.

Genet Epidemiol. 2012 Sep;36(6):549-60. doi: 10.1002/gepi.21648. Epub 2012 Jun 6.

7.

Pooled-DNA Sequencing for Elucidating New Genomic Risk Factors, Rare Variants Underlying Alzheimer's Disease.

Jin SC, Benitez BA, Deming Y, Cruchaga C.

Methods Mol Biol. 2016;1303:299-314. doi: 10.1007/978-1-4939-2627-5_18.

PMID:
26235075
8.

On optimal pooling designs to identify rare variants through massive resequencing.

Lee JS, Choi M, Yan X, Lifton RP, Zhao H.

Genet Epidemiol. 2011 Apr;35(3):139-47. doi: 10.1002/gepi.20561. Epub 2011 Jan 19.

9.

The next generation of molecular markers from massively parallel sequencing of pooled DNA samples.

Futschik A, Schlötterer C.

Genetics. 2010 Sep;186(1):207-18. doi: 10.1534/genetics.110.114397. Epub 2010 May 10.

10.

Design of association studies with pooled or un-pooled next-generation sequencing data.

Kim SY, Li Y, Guo Y, Li R, Holmkvist J, Hansen T, Pedersen O, Wang J, Nielsen R.

Genet Epidemiol. 2010 Jul;34(5):479-91. doi: 10.1002/gepi.20501.

11.

Validation of SNP allele frequencies determined by pooled next-generation sequencing in natural populations of a non-model plant species.

Rellstab C, Zoller S, Tedder A, Gugerli F, Fischer MC.

PLoS One. 2013 Nov 7;8(11):e80422. doi: 10.1371/journal.pone.0080422. eCollection 2013.

12.

Next Generation Sequencing of Pooled Samples: Guideline for Variants' Filtering.

Anand S, Mangano E, Barizzone N, Bordoni R, Sorosina M, Clarelli F, Corrado L, Martinelli Boneschi F, D'Alfonso S, De Bellis G.

Sci Rep. 2016 Sep 27;6:33735. doi: 10.1038/srep33735.

13.

Evaluation of allele frequency estimation using pooled sequencing data simulation.

Guo Y, Samuels DC, Li J, Clark T, Li CI, Shyr Y.

ScientificWorldJournal. 2013;2013:895496. doi: 10.1155/2013/895496. Epub 2013 Feb 7.

14.

Resequencing of pooled DNA for detecting disease associations with rare variants.

Wang T, Lin CY, Rohan TE, Ye K.

Genet Epidemiol. 2010 Jul;34(5):492-501. doi: 10.1002/gepi.20502.

15.

A statistical method for the detection of variants from next-generation resequencing of DNA pools.

Bansal V.

Bioinformatics. 2010 Jun 15;26(12):i318-24. doi: 10.1093/bioinformatics/btq214. Erratum in: Bioinformatics. 2016 Oct 15;32(20):3213.

16.

Accurate variant detection across non-amplified and whole genome amplified DNA using targeted next generation sequencing.

ElSharawy A, Warner J, Olson J, Forster M, Schilhabel MB, Link DR, Rose-John S, Schreiber S, Rosenstiel P, Brayer J, Franke A.

BMC Genomics. 2012 Sep 20;13:500. doi: 10.1186/1471-2164-13-500.

17.

Estimation of allele frequency and association mapping using next-generation sequencing data.

Kim SY, Lohmueller KE, Albrechtsen A, Li Y, Korneliussen T, Tian G, Grarup N, Jiang T, Andersen G, Witte D, Jorgensen T, Hansen T, Pedersen O, Wang J, Nielsen R.

BMC Bioinformatics. 2011 Jun 11;12:231. doi: 10.1186/1471-2105-12-231.

18.

Cost-effective genome-wide estimation of allele frequencies from pooled DNA in Atlantic salmon (Salmo salar L.).

Ozerov M, Vasemägi A, Wennevik V, Niemelä E, Prusov S, Kent M, Vähä JP.

BMC Genomics. 2013 Jan 16;14:12. doi: 10.1186/1471-2164-14-12.

19.

An evaluation of allele frequency estimation accuracy using pooled sequencing data.

Guo Y, Cai Q, Li C, Li J, Courtney R, Zheng W, Long J.

Int J Comput Biol Drug Des. 2013;6(4):279-93. doi: 10.1504/IJCBDD.2013.056709. Epub 2013 Sep 30.

20.

Analysis and optimal design for association studies using next-generation sequencing with case-control pools.

Liang WE, Thomas DC, Conti DV.

Genet Epidemiol. 2012 Dec;36(8):870-81. doi: 10.1002/gepi.21681. Epub 2012 Sep 12.

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