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Items: 1 to 20 of 366

1.

Deconvolution of mixture spectra and increased throughput of peptide identification by utilization of intensified complementary ions formed in tandem mass spectrometry.

Kryuchkov F, Verano-Braga T, Hansen TA, Sprenger RR, Kjeldsen F.

J Proteome Res. 2013 Jul 5;12(7):3362-71. doi: 10.1021/pr400210m. Epub 2013 Jun 19.

PMID:
23725413
2.

VEMS 3.0: algorithms and computational tools for tandem mass spectrometry based identification of post-translational modifications in proteins.

Matthiesen R, Trelle MB, Højrup P, Bunkenborg J, Jensen ON.

J Proteome Res. 2005 Nov-Dec;4(6):2338-47.

PMID:
16335983
3.
4.

High-throughput database search and large-scale negative polarity liquid chromatography-tandem mass spectrometry with ultraviolet photodissociation for complex proteomic samples.

Madsen JA, Xu H, Robinson MR, Horton AP, Shaw JB, Giles DK, Kaoud TS, Dalby KN, Trent MS, Brodbelt JS.

Mol Cell Proteomics. 2013 Sep;12(9):2604-14. doi: 10.1074/mcp.O113.028258. Epub 2013 May 21.

5.

Improving protein identification using complementary fragmentation techniques in fourier transform mass spectrometry.

Nielsen ML, Savitski MM, Zubarev RA.

Mol Cell Proteomics. 2005 Jun;4(6):835-45. Epub 2005 Mar 16.

6.

[A novel approach for peptide identification by tandem mass spectrometry].

Sheng QH, Tang HX, Xie T, Wang LS, Ding DF.

Sheng Wu Hua Xue Yu Sheng Wu Wu Li Xue Bao (Shanghai). 2003 Aug;35(8):734-40. Chinese.

7.

Effectiveness of CID, HCD, and ETD with FT MS/MS for degradomic-peptidomic analysis: comparison of peptide identification methods.

Shen Y, Tolić N, Xie F, Zhao R, Purvine SO, Schepmoes AA, Moore RJ, Anderson GA, Smith RD.

J Proteome Res. 2011 Sep 2;10(9):3929-43. doi: 10.1021/pr200052c. Epub 2011 Aug 15.

8.

HI-bone: a scoring system for identifying phenylisothiocyanate-derivatized peptides based on precursor mass and high intensity fragment ions.

Perez-Riverol Y, Sánchez A, Noda J, Borges D, Carvalho PC, Wang R, Vizcaíno JA, Betancourt L, Ramos Y, Duarte G, Nogueira FC, González LJ, Padrón G, Tabb DL, Hermjakob H, Domont GB, Besada V.

Anal Chem. 2013 Apr 2;85(7):3515-20. doi: 10.1021/ac303239g. Epub 2013 Mar 20.

PMID:
23448308
9.

Proteomics-grade de novo sequencing approach.

Savitski MM, Nielsen ML, Kjeldsen F, Zubarev RA.

J Proteome Res. 2005 Nov-Dec;4(6):2348-54.

PMID:
16335984
10.

Identification of bacteria using tandem mass spectrometry combined with a proteome database and statistical scoring.

Dworzanski JP, Snyder AP, Chen R, Zhang H, Wishart D, Li L.

Anal Chem. 2004 Apr 15;76(8):2355-66.

PMID:
15080748
11.

De novo sequencing methods in proteomics.

Hughes C, Ma B, Lajoie GA.

Methods Mol Biol. 2010;604:105-21. doi: 10.1007/978-1-60761-444-9_8.

PMID:
20013367
12.

Increased identification of peptides by enhanced data processing of high-resolution MALDI TOF/TOF mass spectra prior to database searching.

Rejtar T, Chen HS, Andreev V, Moskovets E, Karger BL.

Anal Chem. 2004 Oct 15;76(20):6017-28.

PMID:
15481949
13.

N-terminal sequence tagging using reliably determined b2 ions: a useful approach to deconvolute tandem mass spectra of co-fragmented peptides in proteomics.

Kryuchkov F, Verano-Braga T, Kjeldsen F.

J Proteomics. 2014 May 30;103:254-60. doi: 10.1016/j.jprot.2014.03.039. Epub 2014 Apr 12.

PMID:
24726481
14.

PTM MarkerFinder, a software tool to detect and validate spectra from peptides carrying post-translational modifications.

Nanni P, Panse C, Gehrig P, Mueller S, Grossmann J, Schlapbach R.

Proteomics. 2013 Aug;13(15):2251-5. doi: 10.1002/pmic.201300036. Epub 2013 Jul 1.

PMID:
23713006
15.

An algorithm for identifying multiply modified endogenous proteins using both full-scan and high-resolution tandem mass spectrometric data.

Mazur MT, Fyhr R.

Rapid Commun Mass Spectrom. 2011 Dec 15;25(23):3617-26. doi: 10.1002/rcm.5257.

PMID:
22095511
16.

Identification of related peptides through the analysis of fragment ion mass shifts.

Wilhelm T, Jones AM.

J Proteome Res. 2014 Sep 5;13(9):4002-11. doi: 10.1021/pr500347e. Epub 2014 Aug 5.

PMID:
25058668
17.

Proteome analysis of Sorangium cellulosum employing 2D-HPLC-MS/MS and improved database searching strategies for CID and ETD fragment spectra.

Leinenbach A, Hartmer R, Lubeck M, Kneissl B, Elnakady YA, Baessmann C, Müller R, Huber CG.

J Proteome Res. 2009 Sep;8(9):4350-61. doi: 10.1021/pr9004647.

PMID:
19634914
18.

Enhanced peptide identification by electron transfer dissociation using an improved Mascot Percolator.

Wright JC, Collins MO, Yu L, Käll L, Brosch M, Choudhary JS.

Mol Cell Proteomics. 2012 Aug;11(8):478-91. doi: 10.1074/mcp.O111.014522. Epub 2012 Apr 6.

19.

Automated phosphopeptide identification using multiple MS/MS fragmentation modes.

Vandenbogaert M, Hourdel V, Jardin-Mathé O, Bigeard J, Bonhomme L, Legros V, Hirt H, Schwikowski B, Pflieger D.

J Proteome Res. 2012 Dec 7;11(12):5695-703. doi: 10.1021/pr300507j. Epub 2012 Nov 7.

PMID:
23094866
20.

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