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Items: 1 to 20 of 96


VisANT 4.0: Integrative network platform to connect genes, drugs, diseases and therapies.

Hu Z, Chang YC, Wang Y, Huang CL, Liu Y, Tian F, Granger B, Delisi C.

Nucleic Acids Res. 2013 Jul;41(Web Server issue):W225-31. doi: 10.1093/nar/gkt401. Epub 2013 May 28.


VisANT 3.5: multi-scale network visualization, analysis and inference based on the gene ontology.

Hu Z, Hung JH, Wang Y, Chang YC, Huang CL, Huyck M, DeLisi C.

Nucleic Acids Res. 2009 Jul;37(Web Server issue):W115-21. doi: 10.1093/nar/gkp406. Epub 2009 May 21.


VisANT: an online visualization and analysis tool for biological interaction data.

Hu Z, Mellor J, Wu J, DeLisi C.

BMC Bioinformatics. 2004 Feb 19;5:17.


Using VisANT to Analyze Networks.

Hu Z.

Curr Protoc Bioinformatics. 2014;45:8.8.1-39. doi: 10.1002/0471250953.bi0808s45.


VisANT: data-integrating visual framework for biological networks and modules.

Hu Z, Mellor J, Wu J, Yamada T, Holloway D, Delisi C.

Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W352-7.


DTome: a web-based tool for drug-target interactome construction.

Sun J, Wu Y, Xu H, Zhao Z.

BMC Bioinformatics. 2012 Jun 11;13 Suppl 9:S7. doi: 10.1186/1471-2105-13-S9-S7.


DT-Web: a web-based application for drug-target interaction and drug combination prediction through domain-tuned network-based inference.

Alaimo S, Bonnici V, Cancemi D, Ferro A, Giugno R, Pulvirenti A.

BMC Syst Biol. 2015;9 Suppl 3:S4. doi: 10.1186/1752-0509-9-S3-S4. Epub 2015 Jun 1.


IPAD: the Integrated Pathway Analysis Database for Systematic Enrichment Analysis.

Zhang F, Drabier R.

BMC Bioinformatics. 2012;13 Suppl 15:S7. doi: 10.1186/1471-2105-13-S15-S7. Epub 2012 Sep 11.


Systems pharmacology strategies for drug discovery and combination with applications to cardiovascular diseases.

Li P, Chen J, Wang J, Zhou W, Wang X, Li B, Tao W, Wang W, Wang Y, Yang L.

J Ethnopharmacol. 2014;151(1):93-107. doi: 10.1016/j.jep.2013.07.001. Epub 2013 Jul 9.


Network analyses in systems pharmacology.

Berger SI, Iyengar R.

Bioinformatics. 2009 Oct 1;25(19):2466-72. doi: 10.1093/bioinformatics/btp465. Epub 2009 Jul 30. Review.


VisANT: an integrative framework for networks in systems biology.

Hu Z, Snitkin ES, DeLisi C.

Brief Bioinform. 2008 Jul;9(4):317-25. doi: 10.1093/bib/bbn020. Epub 2008 May 7.


GUILDify: a web server for phenotypic characterization of genes through biological data integration and network-based prioritization algorithms.

Guney E, Garcia-Garcia J, Oliva B.

Bioinformatics. 2014 Jun 15;30(12):1789-90. doi: 10.1093/bioinformatics/btu092. Epub 2014 Feb 14.


Drug target prediction and repositioning using an integrated network-based approach.

Emig D, Ivliev A, Pustovalova O, Lancashire L, Bureeva S, Nikolsky Y, Bessarabova M.

PLoS One. 2013 Apr 4;8(4):e60618. doi: 10.1371/journal.pone.0060618. Print 2013.


PiHelper: an open source framework for drug-target and antibody-target data.

Aksoy BA, Gao J, Dresdner G, Wang W, Root A, Jing X, Cerami E, Sander C.

Bioinformatics. 2013 Aug 15;29(16):2071-2. doi: 10.1093/bioinformatics/btt345. Epub 2013 Jun 12.


VisANT 3.0: new modules for pathway visualization, editing, prediction and construction.

Hu Z, Ng DM, Yamada T, Chen C, Kawashima S, Mellor J, Linghu B, Kanehisa M, Stuart JM, DeLisi C.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W625-32. Epub 2007 Jun 22.


Prediction of drugs having opposite effects on disease genes in a directed network.

Yu H, Choo S, Park J, Jung J, Kang Y, Lee D.

BMC Syst Biol. 2016 Jan 11;10 Suppl 1:2. doi: 10.1186/s12918-015-0243-2.


Phenome-driven disease genetics prediction toward drug discovery.

Chen Y, Li L, Zhang GQ, Xu R.

Bioinformatics. 2015 Jun 15;31(12):i276-83. doi: 10.1093/bioinformatics/btv245.


The Disease and Gene Annotations (DGA): an annotation resource for human disease.

Peng K, Xu W, Zheng J, Huang K, Wang H, Tong J, Lin Z, Liu J, Cheng W, Fu D, Du P, Kibbe WA, Lin SM, Xia T.

Nucleic Acids Res. 2013 Jan;41(Database issue):D553-60. doi: 10.1093/nar/gks1244. Epub 2012 Nov 28.


Genes2FANs: connecting genes through functional association networks.

Dannenfelser R, Clark NR, Ma'ayan A.

BMC Bioinformatics. 2012 Jul 2;13:156. doi: 10.1186/1471-2105-13-156.


Systems approaches to polypharmacology and drug discovery.

Boran AD, Iyengar R.

Curr Opin Drug Discov Devel. 2010 May;13(3):297-309. Review.

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