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Items: 1 to 20 of 117

1.

From a biological hypothesis to the construction of a mathematical model.

Cohen D, Kuperstein I, Barillot E, Zinovyev A, Calzone L.

Methods Mol Biol. 2013;1021:107-25. doi: 10.1007/978-1-62703-450-0_6.

PMID:
23715982
2.

A data integration approach for cell cycle analysis oriented to model simulation in systems biology.

Alfieri R, Merelli I, Mosca E, Milanesi L.

BMC Syst Biol. 2007 Aug 1;1:35.

3.

Perspectives on mathematical modeling for receptor-mediated processes.

Potter LK, Tobin FL.

J Recept Signal Transduct Res. 2007;27(1):1-25.

PMID:
17365507
4.

Practical use of BiNoM: a biological network manager software.

Bonnet E, Calzone L, Rovera D, Stoll G, Barillot E, Zinovyev A.

Methods Mol Biol. 2013;1021:127-46. doi: 10.1007/978-1-62703-450-0_7.

PMID:
23715983
5.

SysBioMed report: advancing systems biology for medical applications.

Wolkenhauer O, Fell D, De Meyts P, Blüthgen N, Herzel H, Le Novère N, Höfer T, Schürrle K, van Leeuwen I.

IET Syst Biol. 2009 May;3(3):131-6. doi: 10.1049/iet-syb.2009.0005.

PMID:
19449974
6.

Incremental and unifying modelling formalism for biological interaction networks.

Yartseva A, Klaudel H, Devillers R, Képès F.

BMC Bioinformatics. 2007 Nov 8;8:433.

7.

Mathematical formalisms based on approximated kinetic representations for modeling genetic and metabolic pathways.

Alves R, Vilaprinyo E, Hernádez-Bermejo B, Sorribas A.

Biotechnol Genet Eng Rev. 2008;25:1-40. Review.

PMID:
21412348
8.

Mathematical models of cell cycle regulation.

Fuss H, Dubitzky W, Downes CS, Kurth MJ.

Brief Bioinform. 2005 Jun;6(2):163-77. Review.

PMID:
15975225
9.

Pocket proteins and cell cycle regulation in inner ear development.

Rocha-Sanchez SM, Beisel KW.

Int J Dev Biol. 2007;51(6-7):585-95. Review.

10.

Engineering simulations for cancer systems biology.

Bown J, Andrews PS, Deeni Y, Goltsov A, Idowu M, Polack FA, Sampson AT, Shovman M, Stepney S.

Curr Drug Targets. 2012 Nov;13(12):1560-74. Review.

PMID:
22974398
11.

A general model of reaction kinetics in biological systems.

Haag JE, Vande Wouwer A, Remy M.

Bioprocess Biosyst Eng. 2005 Aug;27(5):303-9. Epub 2005 Jun 29.

PMID:
15986214
12.

Sustainable model building the role of standards and biological semantics.

Krause F, Schulz M, Swainston N, Liebermeister W.

Methods Enzymol. 2011;500:371-95. doi: 10.1016/B978-0-12-385118-5.00019-0.

PMID:
21943907
13.

A model diagram layout extension for SBML.

Gauges R, Rost U, Sahle S, Wegner K.

Bioinformatics. 2006 Aug 1;22(15):1879-85. Epub 2006 May 18.

PMID:
16709586
14.

Computer evaluation of network dynamics models with application to cell cycle control in budding yeast.

Allen NA, Chen KC, Shaffer CA, Tyson JJ, Watson LT.

Syst Biol (Stevenage). 2006 Jan;153(1):13-21.

PMID:
16983831
15.

Resources, standards and tools for systems biology.

Wierling C, Herwig R, Lehrach H.

Brief Funct Genomic Proteomic. 2007 Sep;6(3):240-51. Epub 2007 Oct 17.

PMID:
17942476
16.

Regulation of endogenous E2F1 stability by the retinoblastoma family proteins.

Martelli F, Livingston DM.

Proc Natl Acad Sci U S A. 1999 Mar 16;96(6):2858-63.

17.

Modeling biochemical transformation processes and information processing with Narrator.

Mandel JJ, Fuss H, Palfreyman NM, Dubitzky W.

BMC Bioinformatics. 2007 Mar 27;8:103.

18.

Modeling and simulation of biological systems with stochasticity.

Meng TC, Somani S, Dhar P.

In Silico Biol. 2004;4(3):293-309.

PMID:
15724281
19.

Evolving intricacies and implications of E2F1 regulation.

Mundle SD, Saberwal G.

FASEB J. 2003 Apr;17(6):569-74. Review.

PMID:
12665469
20.

Modeling of cellular processes: methods, data, and requirements.

Millat T, Wolkenhauer O, Fischer RJ, Bahl H.

Methods Mol Biol. 2011;696:429-47. doi: 10.1007/978-1-60761-987-1_27.

PMID:
21063964

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