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Items: 1 to 20 of 108

1.

DNA interaction with Hoechst 33258: stretching experiments decouple the different binding modes.

Silva EF, Ramos EB, Rocha MS.

J Phys Chem B. 2013 Jun 20;117(24):7292-6. doi: 10.1021/jp403945e. Epub 2013 Jun 11.

PMID:
23713984
2.

DNA interaction with Actinomycin D: mechanical measurements reveal the details of the binding data.

Cesconetto EC, Junior FS, Crisafuli FA, Mesquita ON, Ramos EB, Rocha MS.

Phys Chem Chem Phys. 2013 Jul 14;15(26):11070-7. doi: 10.1039/c3cp50898f. Epub 2013 May 29.

PMID:
23715013
3.

Binding of a porphyrin conjugate of Hoechst 33258 to DNA. I. UV-visible and melting studies detect multiple binding modes to a 12-mer nonself-complementary duplex.

Frau S, Bichenkova EV, Fedorova OS, Lokhov S, Douglas KT.

Nucleosides Nucleotides Nucleic Acids. 2001 Jan-Feb;20(1-2):131-43.

PMID:
11303559
4.

Extracting physical chemistry from mechanics: a new approach to investigate DNA interactions with drugs and proteins in single molecule experiments.

Rocha MS.

Integr Biol (Camb). 2015 Sep;7(9):967-86. doi: 10.1039/c5ib00127g. Epub 2015 Aug 19. Review.

PMID:
26287962
5.

DNA interaction with diaminobenzidine studied with optical tweezers and dynamic light scattering.

Reis LA, Ramos EB, Rocha MS.

J Phys Chem B. 2013 Nov 21;117(46):14345-50. doi: 10.1021/jp409544e. Epub 2013 Nov 7.

PMID:
24164302
6.

DNA interaction with DAPI fluorescent dye: Force spectroscopy decouples two different binding modes.

Reis LA, Rocha MS.

Biopolymers. 2017 May;107(5). doi: 10.1002/bip.23015.

PMID:
28124375
7.

Multiple binding modes for dicationic Hoechst 33258 to DNA.

Guan Y, Shi R, Li X, Zhao M, Li Y.

J Phys Chem B. 2007 Jun 28;111(25):7336-44. Epub 2007 May 26.

PMID:
17530793
8.

Discriminating small molecule DNA binding modes by single molecule force spectroscopy.

Krautbauer R, Pope LH, Schrader TE, Allen S, Gaub HE.

FEBS Lett. 2002 Jan 16;510(3):154-8.

9.
10.

DNA-cisplatin interaction studied with single molecule stretching experiments.

Crisafuli FA, Cesconetto EC, Ramos EB, Rocha MS.

Integr Biol (Camb). 2012 May;4(5):568-74. doi: 10.1039/c2ib00183g. Epub 2012 Apr 18.

PMID:
22513758
11.

Single beam optical tweezers setup with backscattered light detection for three-dimensional measurements on DNA and nanopores.

Sischka A, Kleimann C, Hachmann W, Schäfer MM, Seuffert I, Tönsing K, Anselmetti D.

Rev Sci Instrum. 2008 Jun;79(6):063702. doi: 10.1063/1.2938401.

PMID:
18601408
12.

Interaction of oxazole yellow dyes with DNA studied with hybrid optical tweezers and fluorescence microscopy.

Murade CU, Subramaniam V, Otto C, Bennink ML.

Biophys J. 2009 Aug 5;97(3):835-43. doi: 10.1016/j.bpj.2009.05.024.

13.

The Hoechst 33258 covalent dimer covers a total turn of the double-stranded DNA.

Streltsov SA, Gromyko AV, Oleinikov VA, Zhuze AL.

J Biomol Struct Dyn. 2006 Dec;24(3):285-302. Erratum in: J Biomol Struct Dyn. 2007 Feb;24(4):X.

PMID:
17054387
14.

Single-molecule manipulation of double-stranded DNA using optical tweezers: interaction studies of DNA with RecA and YOYO-1.

Bennink ML, Schärer OD, Kanaar R, Sakata-Sogawa K, Schins JM, Kanger JS, de Grooth BG, Greve J.

Cytometry. 1999 Jul 1;36(3):200-8.

PMID:
10404969
15.

Measuring DNA-protein binding affinity on a single molecule using optical tweezers.

McCauley MJ, Williams MC.

Methods Mol Biol. 2011;749:305-15. doi: 10.1007/978-1-61779-142-0_21.

PMID:
21674381
16.
17.

Controlling Cooperativity in β-Cyclodextrin-DNA Binding Reactions.

Alves PS, Mesquita ON, Rocha MS.

J Phys Chem Lett. 2015 Sep 17;6(18):3549-54. doi: 10.1021/acs.jpclett.5b01603. Epub 2015 Aug 28.

PMID:
26722722
18.

Binding of a porphyrin conjugate of Hoechst 33258 to DNA. II. NMR spectroscopic studies detect multiple binding modes to a 12-mer nonself-complementary duplex DNA.

Frau S, Bichenkova EV, Morris GA, Douglas KT.

Nucleosides Nucleotides Nucleic Acids. 2001 Jan-Feb;20(1-2):145-56.

PMID:
11303560
20.

Influence of ionic strength on Hoechst 33258 binding with DNA.

Vardevanyan PO, Antonyan AP, Parsadanyan MA, Pirumyan KV, Muradyan AM, Karapetian AT.

J Biomol Struct Dyn. 2008 Jun;25(6):641-6.

PMID:
18399697

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