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Items: 1 to 20 of 119

1.

Transposon insertion sequencing: a new tool for systems-level analysis of microorganisms.

van Opijnen T, Camilli A.

Nat Rev Microbiol. 2013 Jul;11(7):435-42. doi: 10.1038/nrmicro3033. Epub 2013 May 28. Review.

2.

Genome-Wide Fitness and Genetic Interactions Determined by Tn-seq, a High-Throughput Massively Parallel Sequencing Method for Microorganisms.

van Opijnen T, Lazinski DW, Camilli A.

Curr Protoc Microbiol. 2015 Feb 2;36:1E.3.1-24. doi: 10.1002/9780471729259.mc01e03s36.

3.

Genome-wide fitness and genetic interactions determined by Tn-seq, a high-throughput massively parallel sequencing method for microorganisms.

van Opijnen T, Camilli A.

Curr Protoc Microbiol. 2010 Nov;Chapter 1:Unit1E.3. doi: 10.1002/9780471729259.mc01e03s19.

4.

Approaches to querying bacterial genomes with transposon-insertion sequencing.

Barquist L, Boinett CJ, Cain AK.

RNA Biol. 2013 Jul;10(7):1161-9. doi: 10.4161/rna.24765. Epub 2013 Apr 23. Review.

5.

Massive parallel insertion site sequencing of an arrayed Sinorhizobium meliloti signature-tagged mini-Tn 5 transposon mutant library.

Serrania J, Johner T, Rupp O, Goesmann A, Becker A.

J Biotechnol. 2017 Sep 10;257:9-12. doi: 10.1016/j.jbiotec.2017.02.019. Epub 2017 Feb 21.

PMID:
28235609
6.

ESSENTIALS: software for rapid analysis of high throughput transposon insertion sequencing data.

Zomer A, Burghout P, Bootsma HJ, Hermans PW, van Hijum SA.

PLoS One. 2012;7(8):e43012. doi: 10.1371/journal.pone.0043012. Epub 2012 Aug 10.

8.

High-throughput insertion tracking by deep sequencing for the analysis of bacterial pathogens.

Wong SM, Gawronski JD, Lapointe D, Akerley BJ.

Methods Mol Biol. 2011;733:209-22. doi: 10.1007/978-1-61779-089-8_15.

PMID:
21431773
9.

Genome-Wide Fitness and Genetic Interactions Determined by Tn-seq, a High-Throughput Massively Parallel Sequencing Method for Microorganisms.

van Opijnen T, Lazinski DW, Camilli A.

Curr Protoc Mol Biol. 2014 Apr 14;106:7.16.1-24. doi: 10.1002/0471142727.mb0716s106. Review.

10.
11.

Rapid 96-well plates DNA extraction and sequencing procedures to identify genome-wide transposon insertion sites in a difficult to lyse bacterium: Lactobacillus casei.

Scornec H, Tichit M, Bouchier C, Pédron T, Cavin JF, Sansonetti PJ, Licandro-Seraut H.

J Microbiol Methods. 2014 Nov;106:78-82. doi: 10.1016/j.mimet.2014.08.001. Epub 2014 Aug 16.

PMID:
25135488
12.

Generation of a Tn5 transposon library in Haemophilus parasuis and analysis by transposon-directed insertion-site sequencing (TraDIS).

Luan SL, Chaudhuri RR, Peters SE, Mayho M, Weinert LA, Crowther SA, Wang J, Langford PR, Rycroft A, Wren BW, Tucker AW, Maskell DJ; BRaDP1T Consortium.

Vet Microbiol. 2013 Oct 25;166(3-4):558-66. doi: 10.1016/j.vetmic.2013.07.008. Epub 2013 Jul 20.

PMID:
23928120
13.

A rapid and cost-effective method for sequencing pooled cDNA clones by using a combination of transposon insertion and Gateway technology.

Morozumi T, Toki D, Eguchi-Ogawa T, Uenishi H.

Biotechniques. 2011 Sep;51(3):195-7. doi: 10.2144/000113737.

14.

Comprehensive Essentiality Analysis of the Mycobacterium tuberculosis Genome via Saturating Transposon Mutagenesis.

DeJesus MA, Gerrick ER, Xu W, Park SW, Long JE, Boutte CC, Rubin EJ, Schnappinger D, Ehrt S, Fortune SM, Sassetti CM, Ioerger TR.

MBio. 2017 Jan 17;8(1). pii: e02133-16. doi: 10.1128/mBio.02133-16.

16.

The TraDIS toolkit: sequencing and analysis for dense transposon mutant libraries.

Barquist L, Mayho M, Cummins C, Cain AK, Boinett CJ, Page AJ, Langridge GC, Quail MA, Keane JA, Parkhill J.

Bioinformatics. 2016 Apr 1;32(7):1109-11. doi: 10.1093/bioinformatics/btw022. Epub 2016 Jan 21.

17.

Transposon Insertion Site Sequencing for Synthetic Lethal Screening.

Yamaichi Y, Dörr T.

Methods Mol Biol. 2017;1624:39-49. doi: 10.1007/978-1-4939-7098-8_4.

PMID:
28842874
18.

Transposon sequencing: methods and expanding applications.

Kwon YM, Ricke SC, Mandal RK.

Appl Microbiol Biotechnol. 2016 Jan;100(1):31-43. Review.

PMID:
26476650
19.

MAGenTA: a Galaxy implemented tool for complete Tn-Seq analysis and data visualization.

McCoy KM, Antonio ML, van Opijnen T.

Bioinformatics. 2017 Sep 1;33(17):2781-2783. doi: 10.1093/bioinformatics/btx320.

PMID:
28498899
20.

Rapid transposon liquid enrichment sequencing (TnLE-seq) for gene fitness evaluation in underdeveloped bacterial systems.

Fels SR, Zane GM, Blake SM, Wall JD.

Appl Environ Microbiol. 2013 Dec;79(23):7510-7. doi: 10.1128/AEM.02051-13. Epub 2013 Sep 27.

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