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NRF2-ome: an integrated web resource to discover protein interaction and regulatory networks of NRF2.

Türei D, Papp D, Fazekas D, Földvári-Nagy L, Módos D, Lenti K, Csermely P, Korcsmáros T.

Oxid Med Cell Longev. 2013;2013:737591. doi: 10.1155/2013/737591. Epub 2013 Apr 17.


Autophagy Regulatory Network - a systems-level bioinformatics resource for studying the mechanism and regulation of autophagy.

Türei D, Földvári-Nagy L, Fazekas D, Módos D, Kubisch J, Kadlecsik T, Demeter A, Lenti K, Csermely P, Vellai T, Korcsmáros T.

Autophagy. 2015;11(1):155-65. doi: 10.4161/15548627.2014.994346.


The NRF2-related interactome and regulome contain multifunctional proteins and fine-tuned autoregulatory loops.

Papp D, Lenti K, Módos D, Fazekas D, Dúl Z, Türei D, Földvári-Nagy L, Nussinov R, Csermely P, Korcsmáros T.

FEBS Lett. 2012 Jun 21;586(13):1795-802. doi: 10.1016/j.febslet.2012.05.016. Epub 2012 May 26.


SignaLink 2 - a signaling pathway resource with multi-layered regulatory networks.

Fazekas D, Koltai M, Türei D, Módos D, Pálfy M, Dúl Z, Zsákai L, Szalay-Bekő M, Lenti K, Farkas IJ, Vellai T, Csermely P, Korcsmáros T.

BMC Syst Biol. 2013 Jan 18;7:7. doi: 10.1186/1752-0509-7-7.


IIS--Integrated Interactome System: a web-based platform for the annotation, analysis and visualization of protein-metabolite-gene-drug interactions by integrating a variety of data sources and tools.

Carazzolle MF, de Carvalho LM, Slepicka HH, Vidal RO, Pereira GA, Kobarg J, Meirelles GV.

PLoS One. 2014 Jun 20;9(6):e100385. doi: 10.1371/journal.pone.0100385. eCollection 2014. Erratum in: PLoS One. 2014;9(9):e108101.


Coordinate regulation of Phase I and II xenobiotic metabolisms by the Ah receptor and Nrf2.

Köhle C, Bock KW.

Biochem Pharmacol. 2007 Jun 15;73(12):1853-62. Epub 2007 Jan 7. Review.


PDTD: a web-accessible protein database for drug target identification.

Gao Z, Li H, Zhang H, Liu X, Kang L, Luo X, Zhu W, Chen K, Wang X, Jiang H.

BMC Bioinformatics. 2008 Feb 19;9:104. doi: 10.1186/1471-2105-9-104.


ConsensusPathDB--a database for integrating human functional interaction networks.

Kamburov A, Wierling C, Lehrach H, Herwig R.

Nucleic Acids Res. 2009 Jan;37(Database issue):D623-8. doi: 10.1093/nar/gkn698. Epub 2008 Oct 21.


miRFANs: an integrated database for Arabidopsis thaliana microRNA function annotations.

Liu H, Jin T, Liao R, Wan L, Xu B, Zhou S, Guan J.

BMC Plant Biol. 2012 May 14;12:68. doi: 10.1186/1471-2229-12-68.


TransmiR: a transcription factor-microRNA regulation database.

Wang J, Lu M, Qiu C, Cui Q.

Nucleic Acids Res. 2010 Jan;38(Database issue):D119-22. doi: 10.1093/nar/gkp803. Epub 2009 Sep 28.


cPath: open source software for collecting, storing, and querying biological pathways.

Cerami EG, Bader GD, Gross BE, Sander C.

BMC Bioinformatics. 2006 Nov 13;7:497.


The NRF2-mediated oxidative stress response pathway is associated with tumor cell resistance to arsenic trioxide across the NCI-60 panel.

Liu Q, Zhang H, Smeester L, Zou F, Kesic M, Jaspers I, Pi J, Fry RC.

BMC Med Genomics. 2010 Aug 13;3:37. doi: 10.1186/1755-8794-3-37.


Regulatory mechanisms of transcription factors and target genes on gastric cancer by bioinformatics method.

Jian T, Chen Y.

Hepatogastroenterology. 2015 Mar-Apr;62(138):524-8.


TRIP database 2.0: a manually curated information hub for accessing TRP channel interaction network.

Shin YC, Shin SY, Chun JN, Cho HS, Lim JM, Kim HG, So I, Kwon D, Jeon JH.

PLoS One. 2012;7(10):e47165. doi: 10.1371/journal.pone.0047165. Epub 2012 Oct 11.


DTome: a web-based tool for drug-target interactome construction.

Sun J, Wu Y, Xu H, Zhao Z.

BMC Bioinformatics. 2012 Jun 11;13 Suppl 9:S7. doi: 10.1186/1471-2105-13-S9-S7.


P2TF: a comprehensive resource for analysis of prokaryotic transcription factors.

Ortet P, De Luca G, Whitworth DE, Barakat M.

BMC Genomics. 2012 Nov 15;13:628. doi: 10.1186/1471-2164-13-628.


IIIDB: a database for isoform-isoform interactions and isoform network modules.

Tseng YT, Li W, Chen CH, Zhang S, Chen JJ, Zhou X, Liu CC.

BMC Genomics. 2015;16 Suppl 2:S10. doi: 10.1186/1471-2164-16-S2-S10. Epub 2015 Jan 21.


IPAD: the Integrated Pathway Analysis Database for Systematic Enrichment Analysis.

Zhang F, Drabier R.

BMC Bioinformatics. 2012;13 Suppl 15:S7. doi: 10.1186/1471-2105-13-S15-S7. Epub 2012 Sep 11.


The Nrf2 regulatory network provides an interface between redox and intermediary metabolism.

Hayes JD, Dinkova-Kostova AT.

Trends Biochem Sci. 2014 Apr;39(4):199-218. doi: 10.1016/j.tibs.2014.02.002. Epub 2014 Mar 16. Review.


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