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Items: 1 to 20 of 91

1.

Model the evolution of protein interaction network assisted with protein age.

Luo J, Song D, Liang C, Li G.

J Theor Biol. 2013 Sep 21;333:10-7. doi: 10.1016/j.jtbi.2013.05.006.

PMID:
23688824
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Conservation and topology of protein interaction networks under duplication-divergence evolution.

Evlampiev K, Isambert H.

Proc Natl Acad Sci U S A. 2008 Jul 22;105(29):9863-8. doi: 10.1073/pnas.0804119105.

4.

Geometric evolutionary dynamics of protein interaction networks.

Przulj N, Kuchaiev O, Stevanović A, Hayes W.

Pac Symp Biocomput. 2010:178-89.

5.

Divergence pattern of duplicate genes in protein-protein interactions follows the power law.

Zhang Z, Luo ZW, Kishino H, Kearsey MJ.

Mol Biol Evol. 2005 Mar;22(3):501-5. Erratum in: Mol Biol Evol. 2005 Apr;22(4):1158. Mol Biol Evol. 2005 Apr;22(4):1156.

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The evolutionary dynamics of the Saccharomyces cerevisiae protein interaction network after duplication.

Presser A, Elowitz MB, Kellis M, Kishony R.

Proc Natl Acad Sci U S A. 2008 Jan 22;105(3):950-4. doi: 10.1073/pnas.0707293105.

8.

Evolving protein-protein interaction networks: A model based on duplication and mutation at different rates.

Sun JT, Ao B, Zhang S, Bing Z, Yang L.

J Theor Biol. 2014 Jun 7;350:32-6. doi: 10.1016/j.jtbi.2014.01.034.

PMID:
24491255
9.

Reverse engineering the evolution of protein interaction networks.

Gibson TA, Goldberg DS.

Pac Symp Biocomput. 2009:190-202.

10.

Evolutionary rate in the protein interaction network.

Fraser HB, Hirsh AE, Steinmetz LM, Scharfe C, Feldman MW.

Science. 2002 Apr 26;296(5568):750-2.

11.

Gene duplication and hierarchical modularity in intracellular interaction networks.

Hallinan J.

Biosystems. 2004 Apr-Jun;74(1-3):51-62.

PMID:
15125992
12.

Horizontal and vertical growth of S. cerevisiae metabolic network.

Grassi L, Tramontano A.

BMC Evol Biol. 2011 Oct 14;11:301. doi: 10.1186/1471-2148-11-301.

13.

The evolutionary dynamics of protein-protein interaction networks inferred from the reconstruction of ancient networks.

Jin Y, Turaev D, Weinmaier T, Rattei T, Makse HA.

PLoS One. 2013;8(3):e58134. doi: 10.1371/journal.pone.0058134.

14.

Histone modification pattern evolution after yeast gene duplication.

Zou Y, Su Z, Huang W, Gu X.

BMC Evol Biol. 2012 Jul 9;12:111. doi: 10.1186/1471-2148-12-111.

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Preferential duplication in the sparse part of yeast protein interaction network.

Li L, Huang Y, Xia X, Sun Z.

Mol Biol Evol. 2006 Dec;23(12):2467-73.

20.

Topological basis of signal integration in the transcriptional-regulatory network of the yeast, Saccharomyces cerevisiae.

Farkas IJ, Wu C, Chennubhotla C, Bahar I, Oltvai ZN.

BMC Bioinformatics. 2006 Oct 28;7:478.

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