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Items: 1 to 20 of 111

1.

Single-cell transcriptomics reveals bimodality in expression and splicing in immune cells.

Shalek AK, Satija R, Adiconis X, Gertner RS, Gaublomme JT, Raychowdhury R, Schwartz S, Yosef N, Malboeuf C, Lu D, Trombetta JJ, Gennert D, Gnirke A, Goren A, Hacohen N, Levin JZ, Park H, Regev A.

Nature. 2013 Jun 13;498(7453):236-40. doi: 10.1038/nature12172. Epub 2013 May 19.

2.

Single-cell RNA-seq reveals dynamic paracrine control of cellular variation.

Shalek AK, Satija R, Shuga J, Trombetta JJ, Gennert D, Lu D, Chen P, Gertner RS, Gaublomme JT, Yosef N, Schwartz S, Fowler B, Weaver S, Wang J, Wang X, Ding R, Raychowdhury R, Friedman N, Hacohen N, Park H, May AP, Regev A.

Nature. 2014 Jun 19;510(7505):363-9. doi: 10.1038/nature13437. Epub 2014 Jun 11.

3.

Extensive transcriptional heterogeneity revealed by isoform profiling.

Pelechano V, Wei W, Steinmetz LM.

Nature. 2013 May 2;497(7447):127-31. doi: 10.1038/nature12121. Epub 2013 Apr 24.

4.

Regulation of STAT signaling in mouse bone marrow derived dendritic cells by respiratory syncytial virus.

Jie Z, Dinwiddie DL, Senft AP, Harrod KS.

Virus Res. 2011 Mar;156(1-2):127-33. doi: 10.1016/j.virusres.2011.01.007. Epub 2011 Jan 19.

5.

Characterization of regulatory dendritic cells differentiated from the bone marrow of UV-irradiated mice.

Ng RL, Scott NM, Bisley JL, Lambert MJ, Gorman S, Norval M, Hart PH.

Immunology. 2013 Dec;140(4):399-412. doi: 10.1111/imm.12145.

6.

Single-cell messenger RNA sequencing reveals rare intestinal cell types.

Grün D, Lyubimova A, Kester L, Wiebrands K, Basak O, Sasaki N, Clevers H, van Oudenaarden A.

Nature. 2015 Sep 10;525(7568):251-5. doi: 10.1038/nature14966. Epub 2015 Aug 19.

PMID:
26287467
7.

STAT2 hypomorphic mutant mice display impaired dendritic cell development and antiviral response.

Chen LS, Wei PC, Liu T, Kao CH, Pai LM, Lee CK.

J Biomed Sci. 2009 Feb 19;16:22. doi: 10.1186/1423-0127-16-22.

8.

Next-generation sequencing facilitates quantitative analysis of wild-type and Nrl(-/-) retinal transcriptomes.

Brooks MJ, Rajasimha HK, Roger JE, Swaroop A.

Mol Vis. 2011;17:3034-54. Epub 2011 Nov 23.

9.

Single-Cell RNA-Seq of Bone Marrow-Derived Mesenchymal Stem Cells Reveals Unique Profiles of Lineage Priming.

Freeman BT, Jung JP, Ogle BM.

PLoS One. 2015 Sep 9;10(9):e0136199. doi: 10.1371/journal.pone.0136199. eCollection 2015.

10.

Deep sequencing reveals cell-type-specific patterns of single-cell transcriptome variation.

Dueck H, Khaladkar M, Kim TK, Spaethling JM, Francis C, Suresh S, Fisher SA, Seale P, Beck SG, Bartfai T, Kuhn B, Eberwine J, Kim J.

Genome Biol. 2015 Jun 9;16:122. doi: 10.1186/s13059-015-0683-4.

11.

MAST: a flexible statistical framework for assessing transcriptional changes and characterizing heterogeneity in single-cell RNA sequencing data.

Finak G, McDavid A, Yajima M, Deng J, Gersuk V, Shalek AK, Slichter CK, Miller HW, McElrath MJ, Prlic M, Linsley PS, Gottardo R.

Genome Biol. 2015 Dec 10;16:278. doi: 10.1186/s13059-015-0844-5.

12.

Extensive repertoire of membrane-bound and soluble dendritic cell-specific ICAM-3-grabbing nonintegrin 1 (DC-SIGN1) and DC-SIGN2 isoforms. Inter-individual variation in expression of DC-SIGN transcripts.

Mummidi S, Catano G, Lam L, Hoefle A, Telles V, Begum K, Jimenez F, Ahuja SS, Ahuja SK.

J Biol Chem. 2001 Aug 31;276(35):33196-212. Epub 2001 May 3.

13.

Dynamic repertoire of a eukaryotic transcriptome surveyed at single-nucleotide resolution.

Wilhelm BT, Marguerat S, Watt S, Schubert F, Wood V, Goodhead I, Penkett CJ, Rogers J, Bähler J.

Nature. 2008 Jun 26;453(7199):1239-43. doi: 10.1038/nature07002. Epub 2008 May 18.

PMID:
18488015
14.

Immunoproteasomes shape the transcriptome and regulate the function of dendritic cells.

de Verteuil DA, Rouette A, Hardy MP, Lavallée S, Trofimov A, Gaucher É, Perreault C.

J Immunol. 2014 Aug 1;193(3):1121-32. doi: 10.4049/jimmunol.1400871. Epub 2014 Jun 23.

15.

Characterization of murine dendritic cell line JAWS II and primary bone marrow-derived dendritic cells in Chlamydia muridarum antigen presentation and induction of protective immunity.

Jiang X, Shen C, Rey-Ladino J, Yu H, Brunham RC.

Infect Immun. 2008 Jun;76(6):2392-401. doi: 10.1128/IAI.01584-07. Epub 2008 Mar 24.

16.

Deciphering the Developmental Dynamics of the Mouse Liver Transcriptome.

Gunewardena SS, Yoo B, Peng L, Lu H, Zhong X, Klaassen CD, Cui JY.

PLoS One. 2015 Oct 23;10(10):e0141220. doi: 10.1371/journal.pone.0141220. eCollection 2015.

17.

From single-cell to cell-pool transcriptomes: stochasticity in gene expression and RNA splicing.

Marinov GK, Williams BA, McCue K, Schroth GP, Gertz J, Myers RM, Wold BJ.

Genome Res. 2014 Mar;24(3):496-510. doi: 10.1101/gr.161034.113. Epub 2013 Dec 3.

18.

Antagonistic regulation of mRNA expression and splicing by CELF and MBNL proteins.

Wang ET, Ward AJ, Cherone JM, Giudice J, Wang TT, Treacy DJ, Lambert NJ, Freese P, Saxena T, Cooper TA, Burge CB.

Genome Res. 2015 Jun;25(6):858-71. doi: 10.1101/gr.184390.114. Epub 2015 Apr 16.

19.

Assessing gene network stability and individual variability in the fathead minnow (Pimephales promelas) transcriptome.

Martyniuk CJ, Houlahan J.

Comp Biochem Physiol Part D Genomics Proteomics. 2013 Dec;8(4):283-91. doi: 10.1016/j.cbd.2013.08.002. Epub 2013 Aug 20.

PMID:
24036207
20.

RNA imaging. Spatially resolved, highly multiplexed RNA profiling in single cells.

Chen KH, Boettiger AN, Moffitt JR, Wang S, Zhuang X.

Science. 2015 Apr 24;348(6233):aaa6090. doi: 10.1126/science.aaa6090. Epub 2015 Apr 9.

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