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Items: 1 to 20 of 139

1.

Prediction of contacts from correlated sequence substitutions.

Taylor WR, Hamilton RS, Sadowski MI.

Curr Opin Struct Biol. 2013 Jun;23(3):473-9. doi: 10.1016/j.sbi.2013.04.001. Epub 2013 May 14. Review.

PMID:
23680395
2.

Prediction of protein contacts from correlated sequence substitutions.

Sadowski MI, Taylor WR.

Sci Prog. 2013;96(Pt 1):33-42. Review.

PMID:
23738436
4.

A pair-to-pair amino acids substitution matrix and its applications for protein structure prediction.

Eyal E, Frenkel-Morgenstern M, Sobolev V, Pietrokovski S.

Proteins. 2007 Apr 1;67(1):142-53.

PMID:
17243158
5.

Correlated substitution analysis and the prediction of amino acid structural contacts.

Horner DS, Pirovano W, Pesole G.

Brief Bioinform. 2008 Jan;9(1):46-56. Epub 2007 Nov 13. Review.

PMID:
18000015
7.

Large-scale prediction of protein structure and function from sequence.

Tosatto SC, Toppo S.

Curr Pharm Des. 2006;12(17):2067-86. Review.

PMID:
16796556
8.

Predicting reliable regions in protein alignments from sequence profiles.

Tress ML, Jones D, Valencia A.

J Mol Biol. 2003 Jul 18;330(4):705-18.

PMID:
12850141
9.
10.
11.

Accuracy of sequence alignment and fold assessment using reduced amino acid alphabets.

Melo F, Marti-Renom MA.

Proteins. 2006 Jun 1;63(4):986-95.

PMID:
16506243
12.

State-of-the-art bioinformatics protein structure prediction tools (Review).

Pavlopoulou A, Michalopoulos I.

Int J Mol Med. 2011 Sep;28(3):295-310. doi: 10.3892/ijmm.2011.705. Epub 2011 May 23. Review.

PMID:
21617841
13.
14.

Improved pairwise alignments of proteins in the Twilight Zone using local structure predictions.

Huang YM, Bystroff C.

Bioinformatics. 2006 Feb 15;22(4):413-22. Epub 2005 Dec 13.

PMID:
16352653
16.

Assessing the utility of coevolution-based residue-residue contact predictions in a sequence- and structure-rich era.

Kamisetty H, Ovchinnikov S, Baker D.

Proc Natl Acad Sci U S A. 2013 Sep 24;110(39):15674-9. doi: 10.1073/pnas.1314045110. Epub 2013 Sep 5. Erratum in: Proc Natl Acad Sci U S A. 2013 Nov 12;110(46):18734.

17.

Clustering of amino acids for protein secondary structure prediction.

Zheng WM.

J Bioinform Comput Biol. 2004 Jun;2(2):333-42.

PMID:
15297985
18.

De novo structure prediction of globular proteins aided by sequence variation-derived contacts.

Kosciolek T, Jones DT.

PLoS One. 2014 Mar 17;9(3):e92197. doi: 10.1371/journal.pone.0092197. eCollection 2014.

19.

An approach to improving multiple alignments of protein sequences using predicted secondary structure.

Jennings AJ, Edge CM, Sternberg MJ.

Protein Eng. 2001 Apr;14(4):227-31.

PMID:
11391014
20.

Protein secondary structure prediction using local alignments.

Salamov AA, Solovyev VV.

J Mol Biol. 1997 Apr 25;268(1):31-6.

PMID:
9149139

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