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Items: 1 to 20 of 56

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1.

Tristability in cancer-associated microRNA-TF chimera toggle switch.

Lu M, Jolly MK, Gomoto R, Huang B, Onuchic J, Ben-Jacob E.

J Phys Chem B. 2013 Oct 24;117(42):13164-74. doi: 10.1021/jp403156m. Epub 2013 May 30.

PMID:
23679052
2.

MicroRNA networks alter to conform to transcription factor networks adding redundancy and reducing the repertoire of target genes for coordinated regulation.

Iwama H, Murao K, Imachi H, Ishida T.

Mol Biol Evol. 2011 Jan;28(1):639-46. doi: 10.1093/molbev/msq231. Epub 2010 Aug 30.

PMID:
20805189
3.

Mechanisms generating bistability and oscillations in microRNA-mediated motifs.

Zhou P, Cai S, Liu Z, Wang R.

Phys Rev E Stat Nonlin Soft Matter Phys. 2012 Apr;85(4 Pt 1):041916. Epub 2012 Apr 23.

PMID:
22680507
4.

Deciphering the transcriptional circuitry of microRNA genes expressed during human monocytic differentiation.

Schmeier S, MacPherson CR, Essack M, Kaur M, Schaefer U, Suzuki H, Hayashizaki Y, Bajic VB.

BMC Genomics. 2009 Dec 10;10:595. doi: 10.1186/1471-2164-10-595.

5.

Inter- and intra-combinatorial regulation by transcription factors and microRNAs.

Zhou Y, Ferguson J, Chang JT, Kluger Y.

BMC Genomics. 2007 Oct 30;8:396.

6.

Operating principles of tristable circuits regulating cellular differentiation.

Jia D, Jolly MK, Harrison W, Boareto M, Ben-Jacob E, Levine H.

Phys Biol. 2017 May 23;14(3):035007. doi: 10.1088/1478-3975/aa6f90.

PMID:
28443829
7.

Participation of microRNAs in human interactome: extraction of microRNA-microRNA regulations.

Sengupta D, Bandyopadhyay S.

Mol Biosyst. 2011 Jun;7(6):1966-73. doi: 10.1039/c0mb00347f. Epub 2011 Apr 11.

PMID:
21483898
8.

MicroRNA expression profiling of human bone marrow mesenchymal stem cells during osteogenic differentiation reveals Osterix regulation by miR-31.

Baglìo SR, Devescovi V, Granchi D, Baldini N.

Gene. 2013 Sep 15;527(1):321-31. doi: 10.1016/j.gene.2013.06.021. Epub 2013 Jul 1. Erratum in: Gene. 2014 Feb 10;535(2):380.

PMID:
23827457
9.

Inferring coregulation of transcription factors and microRNAs in breast cancer.

Wu JH, Sun YJ, Hsieh PH, Shieh GS.

Gene. 2013 Apr 10;518(1):139-44. doi: 10.1016/j.gene.2012.11.056. Epub 2012 Dec 14.

PMID:
23246694
10.

Stability and multiattractor dynamics of a toggle switch based on a two-stage model of stochastic gene expression.

Strasser M, Theis FJ, Marr C.

Biophys J. 2012 Jan 4;102(1):19-29. doi: 10.1016/j.bpj.2011.11.4000. Epub 2012 Jan 3.

11.

Reaction coordinates for the flipping of genetic switches.

Morelli MJ, Tanase-Nicola S, Allen RJ, ten Wolde PR.

Biophys J. 2008 May 1;94(9):3413-23. doi: 10.1529/biophysj.107.116699. Epub 2008 Jan 25.

12.

MicroRNA reins in embryonic and cancer stem cells.

Mallick B, Chakrabarti J, Ghosh Z.

RNA Biol. 2011 May-Jun;8(3):415-26. Epub 2011 May 1. Review.

PMID:
21525784
13.

Hypoxia responsive gene expression is mediated by various subsets of transcription factors and miRNAs that are determined by the actual oxygen availability.

Licausi F, Weits DA, Pant BD, Scheible WR, Geigenberger P, van Dongen JT.

New Phytol. 2011 Apr;190(2):442-56. doi: 10.1111/j.1469-8137.2010.03451.x. Epub 2010 Sep 14.

14.

Identification of abiotic stress miRNA transcription factor binding motifs (TFBMs) in rice.

Devi SJ, Madhav MS, Kumar GR, Goel AK, Umakanth B, Jahnavi B, Viraktamath BC.

Gene. 2013 Nov 15;531(1):15-22. doi: 10.1016/j.gene.2013.08.060. Epub 2013 Aug 28.

PMID:
23994683
15.

Embryonic stem cell-specific miR302-367 cluster: human gene structure and functional characterization of its core promoter.

Barroso-delJesus A, Romero-López C, Lucena-Aguilar G, Melen GJ, Sanchez L, Ligero G, Berzal-Herranz A, Menendez P.

Mol Cell Biol. 2008 Nov;28(21):6609-19. doi: 10.1128/MCB.00398-08. Epub 2008 Aug 25.

16.

Target identification of microRNAs expressed highly in human embryonic stem cells.

Li SS, Yu SL, Kao LP, Tsai ZY, Singh S, Chen BZ, Ho BC, Liu YH, Yang PC.

J Cell Biochem. 2009 Apr 15;106(6):1020-30. doi: 10.1002/jcb.22084.

PMID:
19229866
17.

Analyzing miRNA co-expression networks to explore TF-miRNA regulation.

Bandyopadhyay S, Bhattacharyya M.

BMC Bioinformatics. 2009 May 28;10:163. doi: 10.1186/1471-2105-10-163.

18.

MicroRNA promoter element discovery in Arabidopsis.

Megraw M, Baev V, Rusinov V, Jensen ST, Kalantidis K, Hatzigeorgiou AG.

RNA. 2006 Sep;12(9):1612-9. Epub 2006 Aug 3.

19.

Emerging roles of microRNAs as molecular switches in the integrated circuit of the cancer cell.

Sotiropoulou G, Pampalakis G, Lianidou E, Mourelatos Z.

RNA. 2009 Aug;15(8):1443-61. doi: 10.1261/rna.1534709. Epub 2009 Jun 26. Review.

20.

An in silico analysis of dynamic changes in microRNA expression profiles in stepwise development of nasopharyngeal carcinoma.

Luo Z, Zhang L, Li Z, Li X, Li G, Yu H, Jiang C, Dai Y, Guo X, Xiang J, Li G.

BMC Med Genomics. 2012 Jan 19;5:3. doi: 10.1186/1755-8794-5-3.

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