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Items: 1 to 20 of 202


A next-generation sequencing method for genotyping-by-sequencing of highly heterozygous autotetraploid potato.

Uitdewilligen JG, Wolters AM, D'hoop BB, Borm TJ, Visser RG, van Eck HJ.

PLoS One. 2013 May 8;8(5):e62355. doi: 10.1371/journal.pone.0062355. Print 2013. Erratum in: PLoS One. 2015;10(10):e0141940.


Single nucleotide polymorphism discovery in elite North American potato germplasm.

Hamilton JP, Hansey CN, Whitty BR, Stoffel K, Massa AN, Van Deynze A, De Jong WS, Douches DS, Buell CR.

BMC Genomics. 2011 Jun 9;12:302. doi: 10.1186/1471-2164-12-302.


Physical mapping of QTL for tuber yield, starch content and starch yield in tetraploid potato (Solanum tuberosum L.) by means of genome wide genotyping by sequencing and the 8.3 K SolCAP SNP array.

Schönhals EM, Ding J, Ritter E, Paulo MJ, Cara N, Tacke E, Hofferbert HR, Lübeck J, Strahwald J, Gebhardt C.

BMC Genomics. 2017 Aug 22;18(1):642. doi: 10.1186/s12864-017-3979-9.


Validation of Genotyping-By-Sequencing Analysis in Populations of Tetraploid Alfalfa by 454 Sequencing.

Rocher S, Jean M, Castonguay Y, Belzile F.

PLoS One. 2015 Jun 26;10(6):e0131918. doi: 10.1371/journal.pone.0131918. eCollection 2015.


High-throughput SNP discovery and genotyping in durum wheat (Triticum durum Desf.).

Trebbi D, Maccaferri M, de Heer P, Sørensen A, Giuliani S, Salvi S, Sanguineti MC, Massi A, van der Vossen EA, Tuberosa R.

Theor Appl Genet. 2011 Aug;123(4):555-69. doi: 10.1007/s00122-011-1607-7. Epub 2011 May 25.


Structure and expression of GSL1 and GSL2 genes encoding gibberellin stimulated-like proteins in diploid and highly heterozygous tetraploid potato reveals their highly conserved and essential status.

Meiyalaghan S, Thomson SJ, Fiers MW, Barrell PJ, Latimer JM, Mohan S, Jones EE, Conner AJ, Jacobs JM.

BMC Genomics. 2014 Jan 2;15:2. doi: 10.1186/1471-2164-15-2.


Development and analysis of a 20K SNP array for potato (Solanum tuberosum): an insight into the breeding history.

Vos PG, Uitdewilligen JG, Voorrips RE, Visser RG, van Eck HJ.

Theor Appl Genet. 2015 Dec;128(12):2387-401. doi: 10.1007/s00122-015-2593-y. Epub 2015 Aug 12.


Low-depth genotyping-by-sequencing (GBS) in a bovine population: strategies to maximize the selection of high quality genotypes and the accuracy of imputation.

Brouard JS, Boyle B, Ibeagha-Awemu EM, Bissonnette N.

BMC Genet. 2017 Apr 5;18(1):32. doi: 10.1186/s12863-017-0501-y.


Genomic prediction of starch content and chipping quality in tetraploid potato using genotyping-by-sequencing.

Sverrisdóttir E, Byrne S, Sundmark EHR, Johnsen HØ, Kirk HG, Asp T, Janss L, Nielsen KL.

Theor Appl Genet. 2017 Oct;130(10):2091-2108. doi: 10.1007/s00122-017-2944-y. Epub 2017 Jul 13.


Targeted Sequencing Reveals Large-Scale Sequence Polymorphism in Maize Candidate Genes for Biomass Production and Composition.

Muraya MM, Schmutzer T, Ulpinnis C, Scholz U, Altmann T.

PLoS One. 2015 Jul 7;10(7):e0132120. doi: 10.1371/journal.pone.0132120. eCollection 2015.


Simple SNP-based minimal marker genotyping for Humulus lupulus L. identification and variety validation.

Henning JA, Coggins J, Peterson M.

BMC Res Notes. 2015 Oct 6;8:542. doi: 10.1186/s13104-015-1492-2.


Natural diversity of potato (Solanum tuberosum) invertases.

Draffehn AM, Meller S, Li L, Gebhardt C.

BMC Plant Biol. 2010 Dec 9;10:271. doi: 10.1186/1471-2229-10-271.


Fast-GBS: a new pipeline for the efficient and highly accurate calling of SNPs from genotyping-by-sequencing data.

Torkamaneh D, Laroche J, Bastien M, Abed A, Belzile F.

BMC Bioinformatics. 2017 Jan 3;18(1):5. doi: 10.1186/s12859-016-1431-9.


Next generation sequencing based development of intron-targeting markers in tetraploid potato and their transferability to other Solanum species.

Ahmadvand R, Poczai P, Hajianfar R, Kolics B, Gorji AM, Polgár Z, Taller J.

Gene. 2014 Apr 25;540(1):117-21. doi: 10.1016/j.gene.2014.02.045. Epub 2014 Feb 26.


High throughput SNP discovery and genotyping in grapevine (Vitis vinifera L.) by combining a re-sequencing approach and SNPlex technology.

Lijavetzky D, Cabezas JA, Ibáñez A, Rodríguez V, Martínez-Zapater JM.

BMC Genomics. 2007 Nov 19;8:424.


A highly robust and optimized sequence-based approach for genetic polymorphism discovery and genotyping in large plant populations.

Jiang N, Zhang F, Wu J, Chen Y, Hu X, Fang O, Leach LJ, Wang D, Luo Z.

Theor Appl Genet. 2016 Sep;129(9):1739-57. doi: 10.1007/s00122-016-2736-9. Epub 2016 Jun 17.


Genome-Wide SNP Calling from Genotyping by Sequencing (GBS) Data: A Comparison of Seven Pipelines and Two Sequencing Technologies.

Torkamaneh D, Laroche J, Belzile F.

PLoS One. 2016 Aug 22;11(8):e0161333. doi: 10.1371/journal.pone.0161333. eCollection 2016.


Copy number variation in potato - an asexually propagated autotetraploid species.

Iovene M, Zhang T, Lou Q, Buell CR, Jiang J.

Plant J. 2013 Jul;75(1):80-89. doi: 10.1111/tpj.12200. Epub 2013 May 13.


Comparison of Kompetitive Allele Specific PCR (KASP) and genotyping by sequencing (GBS) for quality control analysis in maize.

Ertiro BT, Ogugo V, Worku M, Das B, Olsen M, Labuschagne M, Semagn K.

BMC Genomics. 2015 Nov 6;16:908. doi: 10.1186/s12864-015-2180-2.

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