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Items: 1 to 20 of 120


PhenoDigm: analyzing curated annotations to associate animal models with human diseases.

Smedley D, Oellrich A, Köhler S, Ruef B; Sanger Mouse Genetics Project, Westerfield M, Robinson P, Lewis S, Mungall C.

Database (Oxford). 2013 May 9;2013:bat025. doi: 10.1093/database/bat025. Print 2013.


Using association rule mining to determine promising secondary phenotyping hypotheses.

Oellrich A, Jacobsen J, Papatheodorou I; Sanger Mouse Genetics Project, Smedley D.

Bioinformatics. 2014 Jun 15;30(12):i52-59. doi: 10.1093/bioinformatics/btu260.


Argo: enabling the development of bespoke workflows and services for disease annotation.

Batista-Navarro R, Carter J, Ananiadou S.

Database (Oxford). 2016 May 17;2016. pii: baw066. doi: 10.1093/database/baw066. Print 2016.


PhenoMiner: from text to a database of phenotypes associated with OMIM diseases.

Collier N, Groza T, Smedley D, Robinson PN, Oellrich A, Rebholz-Schuhmann D.

Database (Oxford). 2015 Oct 27;2015. pii: bav104. doi: 10.1093/database/bav104. Print 2015.


Linking tissues to phenotypes using gene expression profiles.

Oellrich A; Sanger Mouse Genetics Project, Smedley D.

Database (Oxford). 2014 Mar 13;2014:bau017. doi: 10.1093/database/bau017. Print 2014.


Community gene annotation in practice.

Loveland JE, Gilbert JG, Griffiths E, Harrow JL.

Database (Oxford). 2012 Mar 20;2012:bas009. doi: 10.1093/database/bas009. Print 2012.


The mouse genome database (MGD): new features facilitating a model system.

Eppig JT, Blake JA, Bult CJ, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2007 Jan;35(Database issue):D630-7. Epub 2006 Nov 29.


DISEASES: text mining and data integration of disease-gene associations.

Pletscher-Frankild S, Pallejà A, Tsafou K, Binder JX, Jensen LJ.

Methods. 2015 Mar;74:83-9. doi: 10.1016/j.ymeth.2014.11.020. Epub 2014 Dec 5.


HAGR: the Human Ageing Genomic Resources.

de Magalhães JP, Costa J, Toussaint O.

Nucleic Acids Res. 2005 Jan 1;33(Database issue):D537-43.


The Mouse Genome Database (MGD): updates and enhancements.

Blake JA, Eppig JT, Bult CJ, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2006 Jan 1;34(Database issue):D562-7.


DisGeNET: a discovery platform for the dynamical exploration of human diseases and their genes.

Piñero J, Queralt-Rosinach N, Bravo À, Deu-Pons J, Bauer-Mehren A, Baron M, Sanz F, Furlong LI.

Database (Oxford). 2015 Apr 15;2015:bav028. doi: 10.1093/database/bav028. Print 2015.


PhenoMiner: quantitative phenotype curation at the rat genome database.

Laulederkind SJ, Liu W, Smith JR, Hayman GT, Wang SJ, Nigam R, Petri V, Lowry TF, de Pons J, Dwinell MR, Shimoyama M.

Database (Oxford). 2013 Apr 19;2013:bat015. doi: 10.1093/database/bat015. Print 2013.


Genotator: a disease-agnostic tool for genetic annotation of disease.

Wall DP, Pivovarov R, Tong M, Jung JY, Fusaro VA, DeLuca TF, Tonellato PJ.

BMC Med Genomics. 2010 Oct 29;3:50. doi: 10.1186/1755-8794-3-50.


Mercator: a fast and simple web server for genome scale functional annotation of plant sequence data.

Lohse M, Nagel A, Herter T, May P, Schroda M, Zrenner R, Tohge T, Fernie AR, Stitt M, Usadel B.

Plant Cell Environ. 2014 May;37(5):1250-8. doi: 10.1111/pce.12231. Epub 2013 Dec 17.


The Mouse Genome Database: integration of and access to knowledge about the laboratory mouse.

Blake JA, Bult CJ, Eppig JT, Kadin JA, Richardson JE; Mouse Genome Database Group.

Nucleic Acids Res. 2014 Jan;42(Database issue):D810-7. doi: 10.1093/nar/gkt1225. Epub 2013 Nov 26.


Detection of gene annotations and protein-protein interaction associated disorders through transitive relationships between integrated annotations.

Masseroli M, Canakoglu A, Quigliatti M.

BMC Genomics. 2015;16:S5. doi: 10.1186/1471-2164-16-S6-S5. Epub 2015 Jun 1.


GeneTools--application for functional annotation and statistical hypothesis testing.

Beisvag V, Jünge FK, Bergum H, Jølsum L, Lydersen S, Günther CC, Ramampiaro H, Langaas M, Sandvik AK, Laegreid A.

BMC Bioinformatics. 2006 Oct 24;7:470.


Inherited disorder phenotypes: controlled annotation and statistical analysis for knowledge mining from gene lists.

Masseroli M, Galati O, Manzotti M, Gibert K, Pinciroli F.

BMC Bioinformatics. 2005 Dec 1;6 Suppl 4:S18.


GWASdb: a database for human genetic variants identified by genome-wide association studies.

Li MJ, Wang P, Liu X, Lim EL, Wang Z, Yeager M, Wong MP, Sham PC, Chanock SJ, Wang J.

Nucleic Acids Res. 2012 Jan;40(Database issue):D1047-54. doi: 10.1093/nar/gkr1182. Epub 2011 Dec 1.

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