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Items: 1 to 20 of 223

1.

A compendium of nucleosome and transcript profiles reveals determinants of chromatin architecture and transcription.

van Bakel H, Tsui K, Gebbia M, Mnaimneh S, Hughes TR, Nislow C.

PLoS Genet. 2013 May;9(5):e1003479. doi: 10.1371/journal.pgen.1003479. Epub 2013 May 2.

2.

In vivo effects of histone H3 depletion on nucleosome occupancy and position in Saccharomyces cerevisiae.

Gossett AJ, Lieb JD.

PLoS Genet. 2012;8(6):e1002771. doi: 10.1371/journal.pgen.1002771. Epub 2012 Jun 21.

3.

Chromatin remodelers clear nucleosomes from intrinsically unfavorable sites to establish nucleosome-depleted regions at promoters.

Tolkunov D, Zawadzki KA, Singer C, Elfving N, Morozov AV, Broach JR.

Mol Biol Cell. 2011 Jun 15;22(12):2106-18. doi: 10.1091/mbc.E10-10-0826. Epub 2011 Apr 20.

4.

The chromatin remodelers RSC and ISW1 display functional and chromatin-based promoter antagonism.

Parnell TJ, Schlichter A, Wilson BG, Cairns BR.

Elife. 2015 Mar 30;4:e06073. doi: 10.7554/eLife.06073.

5.

Genomic Nucleosome Organization Reconstituted with Pure Proteins.

Krietenstein N, Wal M, Watanabe S, Park B, Peterson CL, Pugh BF, Korber P.

Cell. 2016 Oct 20;167(3):709-721.e12. doi: 10.1016/j.cell.2016.09.045.

6.

ISWI and CHD chromatin remodelers bind promoters but act in gene bodies.

Zentner GE, Tsukiyama T, Henikoff S.

PLoS Genet. 2013;9(2):e1003317. doi: 10.1371/journal.pgen.1003317. Epub 2013 Feb 28.

7.

Sequence-targeted nucleosome sliding in vivo by a hybrid Chd1 chromatin remodeler.

McKnight JN, Tsukiyama T, Bowman GD.

Genome Res. 2016 May;26(5):693-704. doi: 10.1101/gr.199919.115. Epub 2016 Mar 18.

8.

Weakly positioned nucleosomes enhance the transcriptional competency of chromatin.

Belch Y, Yang J, Liu Y, Malkaram SA, Liu R, Riethoven JJ, Ladunga I.

PLoS One. 2010 Sep 24;5(9):e12984. doi: 10.1371/journal.pone.0012984.

9.

Interaction of transcriptional regulators with specific nucleosomes across the Saccharomyces genome.

Koerber RT, Rhee HS, Jiang C, Pugh BF.

Mol Cell. 2009 Sep 24;35(6):889-902. doi: 10.1016/j.molcel.2009.09.011.

10.

Tup1 stabilizes promoter nucleosome positioning and occupancy at transcriptionally plastic genes.

Rizzo JM, Mieczkowski PA, Buck MJ.

Nucleic Acids Res. 2011 Nov 1;39(20):8803-19. doi: 10.1093/nar/gkr557. Epub 2011 Jul 23.

11.

Stress-dependent dynamics of global chromatin remodeling in yeast: dual role for SWI/SNF in the heat shock stress response.

Shivaswamy S, Iyer VR.

Mol Cell Biol. 2008 Apr;28(7):2221-34. doi: 10.1128/MCB.01659-07. Epub 2008 Jan 22.

12.

Chromatin remodelling at promoters suppresses antisense transcription.

Whitehouse I, Rando OJ, Delrow J, Tsukiyama T.

Nature. 2007 Dec 13;450(7172):1031-5.

PMID:
18075583
13.

Genome-wide nucleosome specificity and directionality of chromatin remodelers.

Yen K, Vinayachandran V, Batta K, Koerber RT, Pugh BF.

Cell. 2012 Jun 22;149(7):1461-73. doi: 10.1016/j.cell.2012.04.036.

14.

Roles of transcription factor Mot3 and chromatin in repression of the hypoxic gene ANB1 in yeast.

Kastaniotis AJ, Mennella TA, Konrad C, Torres AM, Zitomer RS.

Mol Cell Biol. 2000 Oct;20(19):7088-98.

15.

A SWI/SNF- and INO80-dependent nucleosome movement at the INO1 promoter.

Ford J, Odeyale O, Eskandar A, Kouba N, Shen CH.

Biochem Biophys Res Commun. 2007 Oct 5;361(4):974-9. Epub 2007 Jul 30.

16.

The ATP-dependent chromatin remodeling enzyme Fun30 represses transcription by sliding promoter-proximal nucleosomes.

Byeon B, Wang W, Barski A, Ranallo RT, Bao K, Schones DE, Zhao K, Wu C, Wu WH.

J Biol Chem. 2013 Aug 9;288(32):23182-93. doi: 10.1074/jbc.M113.471979. Epub 2013 Jun 18.

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19.

Nucleosome free regions in yeast promoters result from competitive binding of transcription factors that interact with chromatin modifiers.

Ozonov EA, van Nimwegen E.

PLoS Comput Biol. 2013;9(8):e1003181. doi: 10.1371/journal.pcbi.1003181. Epub 2013 Aug 22.

20.

Mechanisms that specify promoter nucleosome location and identity.

Hartley PD, Madhani HD.

Cell. 2009 May 1;137(3):445-58. doi: 10.1016/j.cell.2009.02.043.

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