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The YNP Metagenome Project: Environmental Parameters Responsible for Microbial Distribution in the Yellowstone Geothermal Ecosystem.

Inskeep WP, Jay ZJ, Tringe SG, HerrgÄrd MJ, Rusch DB; YNP Metagenome Project Steering Committee and Working Group Members.

Front Microbiol. 2013 May 6;4:67. doi: 10.3389/fmicb.2013.00067. eCollection 2013.


Metagenomes from high-temperature chemotrophic systems reveal geochemical controls on microbial community structure and function.

Inskeep WP, Rusch DB, Jay ZJ, Herrgard MJ, Kozubal MA, Richardson TH, Macur RE, Hamamura N, Jennings Rd, Fouke BW, Reysenbach AL, Roberto F, Young M, Schwartz A, Boyd ES, Badger JH, Mathur EJ, Ortmann AC, Bateson M, Geesey G, Frazier M.

PLoS One. 2010 Mar 19;5(3):e9773. doi: 10.1371/journal.pone.0009773.


Phylogenetic and Functional Analysis of Metagenome Sequence from High-Temperature Archaeal Habitats Demonstrate Linkages between Metabolic Potential and Geochemistry.

Inskeep WP, Jay ZJ, Herrgard MJ, Kozubal MA, Rusch DB, Tringe SG, Macur RE, Jennings Rd, Boyd ES, Spear JR, Roberto FF.

Front Microbiol. 2013 May 15;4:95. doi: 10.3389/fmicb.2013.00095. eCollection 2013.


Community structure and function of high-temperature chlorophototrophic microbial mats inhabiting diverse geothermal environments.

Klatt CG, Inskeep WP, Herrgard MJ, Jay ZJ, Rusch DB, Tringe SG, Niki Parenteau M, Ward DM, Boomer SM, Bryant DA, Miller SR.

Front Microbiol. 2013 Jun 3;4:106. doi: 10.3389/fmicb.2013.00106. eCollection 2013.


Geomicrobiology of sublacustrine thermal vents in Yellowstone Lake: geochemical controls on microbial community structure and function.

Inskeep WP, Jay ZJ, Macur RE, Clingenpeel S, Tenney A, Lovalvo D, Beam JP, Kozubal MA, Shanks WC, Morgan LA, Kan J, Gorby Y, Yooseph S, Nealson K.

Front Microbiol. 2015 Oct 26;6:1044. doi: 10.3389/fmicb.2015.01044. eCollection 2015.


Predominant Acidilobus-like populations from geothermal environments in yellowstone national park exhibit similar metabolic potential in different hypoxic microbial communities.

Jay ZJ, Rusch DB, Tringe SG, Bailey C, Jennings RM, Inskeep WP.

Appl Environ Microbiol. 2014 Jan;80(1):294-305. doi: 10.1128/AEM.02860-13. Epub 2013 Oct 25.


Linking microbial oxidation of arsenic with detection and phylogenetic analysis of arsenite oxidase genes in diverse geothermal environments.

Hamamura N, Macur RE, Korf S, Ackerman G, Taylor WP, Kozubal M, Reysenbach AL, Inskeep WP.

Environ Microbiol. 2009 Feb;11(2):421-31. doi: 10.1111/j.1462-2920.2008.01781.x.


Niche specialization of novel Thaumarchaeota to oxic and hypoxic acidic geothermal springs of Yellowstone National Park.

Beam JP, Jay ZJ, Kozubal MA, Inskeep WP.

ISME J. 2014 Apr;8(4):938-51. doi: 10.1038/ismej.2013.193. Epub 2013 Nov 7.


Metagenome sequence analysis of filamentous microbial communities obtained from geochemically distinct geothermal channels reveals specialization of three aquificales lineages.

Takacs-Vesbach C, Inskeep WP, Jay ZJ, Herrgard MJ, Rusch DB, Tringe SG, Kozubal MA, Hamamura N, Macur RE, Fouke BW, Reysenbach AL, McDermott TR, Jennings Rd, Hengartner NW, Xie G.

Front Microbiol. 2013 May 29;4:84. doi: 10.3389/fmicb.2013.00084. eCollection 2013.


Coordinating environmental genomics and geochemistry reveals metabolic transitions in a hot spring ecosystem.

Swingley WD, Meyer-Dombard DR, Shock EL, Alsop EB, Falenski HD, Havig JR, Raymond J.

PLoS One. 2012;7(6):e38108. doi: 10.1371/journal.pone.0038108. Epub 2012 Jun 4.


Environmental conditions constrain the distribution and diversity of archaeal merA in Yellowstone National Park, Wyoming, U.S.A.

Wang Y, Boyd E, Crane S, Lu-Irving P, Krabbenhoft D, King S, Dighton J, Geesey G, Barkay T.

Microb Ecol. 2011 Nov;62(4):739-52. doi: 10.1007/s00248-011-9890-z. Epub 2011 Jun 29.


Genome signature analysis of thermal virus metagenomes reveals Archaea and thermophilic signatures.

Pride DT, Schoenfeld T.

BMC Genomics. 2008 Sep 17;9:420. doi: 10.1186/1471-2164-9-420.


Rapid oxidation of arsenite in a hot spring ecosystem, Yellowstone National Park.

Langner HW, Jackson CR, McDermott TR, Inskeep WP.

Environ Sci Technol. 2001 Aug 15;35(16):3302-9.


The distribution, diversity and function of predominant Thermoproteales in high-temperature environments of Yellowstone National Park.

Jay ZJ, Beam JP, Kozubal MA, Jennings RD, Rusch DB, Inskeep WP.

Environ Microbiol. 2016 Dec;18(12):4755-4769. doi: 10.1111/1462-2920.13366. Epub 2016 May 30.


Geoarchaeota: a new candidate phylum in the Archaea from high-temperature acidic iron mats in Yellowstone National Park.

Kozubal MA, Romine M, Jennings Rd, Jay ZJ, Tringe SG, Rusch DB, Beam JP, McCue LA, Inskeep WP.

ISME J. 2013 Mar;7(3):622-34. doi: 10.1038/ismej.2012.132. Epub 2012 Nov 15.


Environmental constraints underpin the distribution and phylogenetic diversity of nifH in the Yellowstone geothermal complex.

Hamilton TL, Boyd ES, Peters JW.

Microb Ecol. 2011 May;61(4):860-70. doi: 10.1007/s00248-011-9824-9. Epub 2011 Mar 2.


Molecular community analysis of arbuscular mycorrhizal fungi in roots of geothermal soils in Yellowstone National Park (USA).

Appoloni S, Lekberg Y, Tercek MT, Zabinski CA, Redecker D.

Microb Ecol. 2008 Nov;56(4):649-59. doi: 10.1007/s00248-008-9384-9. Epub 2008 May 1.


Unravelling core microbial metabolisms in the hypersaline microbial mats of Shark Bay using high-throughput metagenomics.

Ruvindy R, White RA 3rd, Neilan BA, Burns BP.

ISME J. 2016 Jan;10(1):183-96. doi: 10.1038/ismej.2015.87. Epub 2015 May 29.


Isolation and distribution of a novel iron-oxidizing crenarchaeon from acidic geothermal springs in Yellowstone National Park.

Kozubal M, Macur RE, Korf S, Taylor WP, Ackerman GG, Nagy A, Inskeep WP.

Appl Environ Microbiol. 2008 Feb;74(4):942-9. Epub 2007 Dec 14.


Novel, Deep-Branching Heterotrophic Bacterial Populations Recovered from Thermal Spring Metagenomes.

Colman DR, Jay ZJ, Inskeep WP, Jennings Rd, Maas KR, Rusch DB, Takacs-Vesbach CD.

Front Microbiol. 2016 Mar 15;7:304. doi: 10.3389/fmicb.2016.00304. eCollection 2016.

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