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Items: 1 to 20 of 85

1.

RegaDB: community-driven data management and analysis for infectious diseases.

Libin P, Beheydt G, Deforche K, Imbrechts S, Ferreira F, Van Laethem K, Theys K, Carvalho AP, Cavaco-Silva J, Lapadula G, Torti C, Assel M, Wesner S, Snoeck J, Ruelle J, De Bel A, Lacor P, De Munter P, Van Wijngaerden E, Zazzi M, Kaiser R, Ayouba A, Peeters M, de Oliveira T, Alcantara LC, Grossman Z, Sloot P, Otelea D, Paraschiv S, Boucher C, Camacho RJ, Vandamme AM.

Bioinformatics. 2013 Jun 1;29(11):1477-80. doi: 10.1093/bioinformatics/btt162. Epub 2013 May 2.

2.

BioRuby: bioinformatics software for the Ruby programming language.

Goto N, Prins P, Nakao M, Bonnal R, Aerts J, Katayama T.

Bioinformatics. 2010 Oct 15;26(20):2617-9. doi: 10.1093/bioinformatics/btq475. Epub 2010 Aug 25.

3.

MetaBasis: a web-based database containing metadata on software tools and databases in the field of bioinformatics.

Atlamazoglou V, Thireou T, Hamodrakas Y, Spyrou G.

Appl Bioinformatics. 2006;5(3):187-92.

PMID:
16922600
4.

The MOLGENIS toolkit: rapid prototyping of biosoftware at the push of a button.

Swertz MA, Dijkstra M, Adamusiak T, van der Velde JK, Kanterakis A, Roos ET, Lops J, Thorisson GA, Arends D, Byelas G, Muilu J, Brookes AJ, de Brock EO, Jansen RC, Parkinson H.

BMC Bioinformatics. 2010 Dec 21;11 Suppl 12:S12. doi: 10.1186/1471-2105-11-S12-S12.

5.

The Gaggle: an open-source software system for integrating bioinformatics software and data sources.

Shannon PT, Reiss DJ, Bonneau R, Baliga NS.

BMC Bioinformatics. 2006 Mar 28;7:176.

6.

The Ontology Lookup Service, a lightweight cross-platform tool for controlled vocabulary queries.

Côté RG, Jones P, Apweiler R, Hermjakob H.

BMC Bioinformatics. 2006 Feb 28;7:97.

7.

BioLingua: a programmable knowledge environment for biologists.

Massar JP, Travers M, Elhai J, Shrager J.

Bioinformatics. 2005 Jan 15;21(2):199-207. Epub 2004 Aug 12.

PMID:
15308539
8.

The design of Jemboss: a graphical user interface to EMBOSS.

Carver T, Bleasby A.

Bioinformatics. 2003 Sep 22;19(14):1837-43.

PMID:
14512356
9.

GDPC: connecting researchers with multiple integrated data sources.

Casstevens TM, Buckler ES.

Bioinformatics. 2004 Nov 1;20(16):2839-40. Epub 2004 Apr 22.

PMID:
15105279
10.

GeneComber: combining outputs of gene prediction programs for improved results.

Shah SP, McVicker GP, Mackworth AK, Rogic S, Ouellette BF.

Bioinformatics. 2003 Jul 1;19(10):1296-7.

PMID:
12835277
11.

Biowep: a workflow enactment portal for bioinformatics applications.

Romano P, Bartocci E, Bertolini G, De Paoli F, Marra D, Mauri G, Merelli E, Milanesi L.

BMC Bioinformatics. 2007 Mar 8;8 Suppl 1:S19.

12.

ProteomeCommons.org JAF: reference information and tools for proteomics.

Falkner JA, Falkner JW, Andrews PC.

Bioinformatics. 2006 Mar 1;22(5):632-3. Epub 2006 Jan 24.

PMID:
16434446
13.

AnaBench: a Web/CORBA-based workbench for biomolecular sequence analysis.

Badidi E, De Sousa C, Lang BF, Burger G.

BMC Bioinformatics. 2003 Dec 16;4:63.

14.

MUTAGEN: multi-user tool for annotating genomes.

Brügger K, Redder P, Skovgaard M.

Bioinformatics. 2003 Dec 12;19(18):2480-1.

PMID:
14668237
15.

Enabling high-throughput data management for systems biology: the Bioinformatics Resource Manager.

Shah AR, Singhal M, Klicker KR, Stephan EG, Wiley HS, Waters KM.

Bioinformatics. 2007 Apr 1;23(7):906-9. Epub 2007 Feb 25.

PMID:
17324940
16.

SLIMS--a user-friendly sample operations and inventory management system for genotyping labs.

Van Rossum T, Tripp B, Daley D.

Bioinformatics. 2010 Jul 15;26(14):1808-10. doi: 10.1093/bioinformatics/btq271. Epub 2010 May 30.

17.

ClusterControl: a web interface for distributing and monitoring bioinformatics applications on a Linux cluster.

Stocker G, Rieder D, Trajanoski Z.

Bioinformatics. 2004 Mar 22;20(5):805-7. Epub 2004 Jan 29.

PMID:
14751976
18.

MyMolDB: a micromolecular database solution with open source and free components.

Xia B, Tai ZF, Gu YC, Li BJ, Ding LS, Zhou Y.

J Comput Chem. 2011 Oct;32(13):2942-8. doi: 10.1002/jcc.21874. Epub 2011 Jul 5.

PMID:
21728180
19.
20.

FLOSYS--a web-accessible workflow system for protocol-driven biomolecular sequence analysis.

Badidi E, Lang BF, Burger G.

Cell Mol Biol (Noisy-le-grand). 2004 Nov;50(7):785-93.

PMID:
15672461

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