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Tissue culture-induced genetic and epigenetic alterations in rice pure-lines, F1 hybrids and polyploids.

Wang X, Wu R, Lin X, Bai Y, Song C, Yu X, Xu C, Zhao N, Dong Y, Liu B.

BMC Plant Biol. 2013 May 5;13:77. doi: 10.1186/1471-2229-13-77.


Immediate Genetic and Epigenetic Changes in F1 Hybrids Parented by Species with Divergent Genomes in the Rice Genus (Oryza).

Wu Y, Sun Y, Shen K, Sun S, Wang J, Jiang T, Cao S, Josiah SM, Pang J, Lin X, Liu B.

PLoS One. 2015 Jul 24;10(7):e0132911. doi: 10.1371/journal.pone.0132911. eCollection 2015.


Dramatic genotypic difference in, and effect of genetic crossing on, tissue culture-induced mobility of retrotransposon Tos17 in rice.

Lin C, Lin X, Hu L, Yang J, Zhou T, Long L, Xu C, Xing S, Qi B, Dong Y, Liu B.

Plant Cell Rep. 2012 Nov;31(11):2057-63. doi: 10.1007/s00299-012-1316-y. Epub 2012 Sep 4.


Spaceflight-induced genetic and epigenetic changes in the rice (Oryza sativa L.) genome are independent of each other.

Ou X, Long L, Wu Y, Yu Y, Lin X, Qi X, Liu B.

Genome. 2010 Jul;53(7):524-32. doi: 10.1139/g10-030.


Tissue culture-induced variation at simple sequence repeats in sorghum (Sorghum bicolor L.) is genotype-dependent and associated with down-regulated expression of a mismatch repair gene, MLH3.

Zhang M, Wang H, Dong Z, Qi B, Xu K, Liu B.

Plant Cell Rep. 2010 Jan;29(1):51-9. doi: 10.1007/s00299-009-0797-9. Epub 2009 Nov 12.


Tissue culture-induced transpositional activity of mPing is correlated with cytosine methylation in rice.

Ngezahayo F, Xu C, Wang H, Jiang L, Pang J, Liu B.

BMC Plant Biol. 2009 Jul 15;9:91. doi: 10.1186/1471-2229-9-91.


Alteration of DNA methylation level and pattern in sorghum (Sorghum bicolor L.) pure-lines and inter-line F1 hybrids following low-dose laser irradiation.

Wang H, Feng Q, Zhang M, Yang C, Sha W, Liu B.

J Photochem Photobiol B. 2010 Jun 1;99(3):150-3. doi: 10.1016/j.jphotobiol.2010.03.011. Epub 2010 Apr 1.


Global epigenetic and transcriptional trends among two rice subspecies and their reciprocal hybrids.

He G, Zhu X, Elling AA, Chen L, Wang X, Guo L, Liang M, He H, Zhang H, Chen F, Qi Y, Chen R, Deng XW.

Plant Cell. 2010 Jan;22(1):17-33. doi: 10.1105/tpc.109.072041. Epub 2010 Jan 19.


Comparative analysis of DNA methylation changes in two rice genotypes under salt stress and subsequent recovery.

Wang W, Huang F, Qin Q, Zhao X, Li Z, Fu B.

Biochem Biophys Res Commun. 2015 Oct 2;465(4):790-6. doi: 10.1016/j.bbrc.2015.08.089. Epub 2015 Aug 28.


Tissue culture-induced locus-specific alteration in DNA methylation and its correlation with genetic variation in Codonopsis lanceolata Benth. et Hook. f.

Guo WL, Wu R, Zhang YF, Liu XM, Wang HY, Gong L, Zhang ZH, Liu B.

Plant Cell Rep. 2007 Aug;26(8):1297-307. Epub 2007 Mar 10.


High genetic and epigenetic stability in Coffea arabica plants derived from embryogenic suspensions and secondary embryogenesis as revealed by AFLP, MSAP and the phenotypic variation rate.

Bobadilla Landey R, Cenci A, Georget F, Bertrand B, Camayo G, Dechamp E, Herrera JC, Santoni S, Lashermes P, Simpson J, Etienne H.

PLoS One. 2013;8(2):e56372. doi: 10.1371/journal.pone.0056372. Epub 2013 Feb 13.


Genomic and transcriptomic alterations following hybridisation and genome doubling in trigenomic allohexaploid Brassica carinata × Brassica rapa.

Xu Y, Zhao Q, Mei S, Wang J.

Plant Biol (Stuttg). 2012 Sep;14(5):734-44. doi: 10.1111/j.1438-8677.2011.00553.x. Epub 2012 Feb 6.


Genome-wide disruption of gene expression in allopolyploids but not hybrids of rice subspecies.

Xu C, Bai Y, Lin X, Zhao N, Hu L, Gong Z, Wendel JF, Liu B.

Mol Biol Evol. 2014 May;31(5):1066-76. doi: 10.1093/molbev/msu085. Epub 2014 Feb 27.


Quantification of the tissue-culture induced variation in barley (Hordeum vulgare L.).

Bednarek PT, Orłowska R, Koebner RM, Zimny J.

BMC Plant Biol. 2007 Mar 2;7:10.


Tissue culture-induced heritable genomic variation in rice, and their phenotypic implications.

Zhang D, Wang Z, Wang N, Gao Y, Liu Y, Wu Y, Bai Y, Zhang Z, Lin X, Dong Y, Ou X, Xu C, Liu B.

PLoS One. 2014 May 7;9(5):e96879. doi: 10.1371/journal.pone.0096879. eCollection 2014.


Epigenetic Changes in Hybrids.

Greaves IK, Gonzalez-Bayon R, Wang L, Zhu A, Liu PC, Groszmann M, Peacock WJ, Dennis ES.

Plant Physiol. 2015 Aug;168(4):1197-205. doi: 10.1104/pp.15.00231. Epub 2015 May 22. Review.


Rapid genomic alteration in an 'incompatible' pair of maize reciprocal F1 hybrids--a possible cause for the accumulation of inter-strain genetic diversity.

Zhao XX, Chai Y, Wang HY, Zhao N, Liu B.

Hereditas. 2010 Feb;147(1):1-9. doi: 10.1111/j.1601-5223.2009.02139.x.


Consistent and heritable alterations of DNA methylation are induced by tissue culture in maize.

Stelpflug SC, Eichten SR, Hermanson PJ, Springer NM, Kaeppler SM.

Genetics. 2014 Sep;198(1):209-18. doi: 10.1534/genetics.114.165480. Epub 2014 Jul 14.

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