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Items: 1 to 20 of 189

1.

Genome-wide comparative diversity uncovers multiple targets of selection for improvement in hexaploid wheat landraces and cultivars.

Cavanagh CR, Chao S, Wang S, Huang BE, Stephen S, Kiani S, Forrest K, Saintenac C, Brown-Guedira GL, Akhunova A, See D, Bai G, Pumphrey M, Tomar L, Wong D, Kong S, Reynolds M, da Silva ML, Bockelman H, Talbert L, Anderson JA, Dreisigacker S, Baenziger S, Carter A, Korzun V, Morrell PL, Dubcovsky J, Morell MK, Sorrells ME, Hayden MJ, Akhunov E.

Proc Natl Acad Sci U S A. 2013 May 14;110(20):8057-62. doi: 10.1073/pnas.1217133110. Epub 2013 Apr 29.

2.

Population- and genome-specific patterns of linkage disequilibrium and SNP variation in spring and winter wheat (Triticum aestivum L.).

Chao S, Dubcovsky J, Dvorak J, Luo MC, Baenziger SP, Matnyazov R, Clark DR, Talbert LE, Anderson JA, Dreisigacker S, Glover K, Chen J, Campbell K, Bruckner PL, Rudd JC, Haley S, Carver BF, Perry S, Sorrells ME, Akhunov ED.

BMC Genomics. 2010 Dec 29;11:727. doi: 10.1186/1471-2164-11-727.

3.

Characterization of polyploid wheat genomic diversity using a high-density 90,000 single nucleotide polymorphism array.

Wang S, Wong D, Forrest K, Allen A, Chao S, Huang BE, Maccaferri M, Salvi S, Milner SG, Cattivelli L, Mastrangelo AM, Whan A, Stephen S, Barker G, Wieseke R, Plieske J; International Wheat Genome Sequencing Consortium., Lillemo M, Mather D, Appels R, Dolferus R, Brown-Guedira G, Korol A, Akhunova AR, Feuillet C, Salse J, Morgante M, Pozniak C, Luo MC, Dvorak J, Morell M, Dubcovsky J, Ganal M, Tuberosa R, Lawley C, Mikoulitch I, Cavanagh C, Edwards KJ, Hayden M, Akhunov E.

Plant Biotechnol J. 2014 Aug;12(6):787-96. doi: 10.1111/pbi.12183. Epub 2014 Mar 20.

4.

Genome-wide association study reveals novel quantitative trait Loci associated with resistance to multiple leaf spot diseases of spring wheat.

Gurung S, Mamidi S, Bonman JM, Xiong M, Brown-Guedira G, Adhikari TB.

PLoS One. 2014 Sep 30;9(9):e108179. doi: 10.1371/journal.pone.0108179. eCollection 2014.

5.

A yield-associated gene TaCWI, in wheat: its function, selection and evolution in global breeding revealed by haplotype analysis.

Jiang Y, Jiang Q, Hao C, Hou J, Wang L, Zhang H, Zhang S, Chen X, Zhang X.

Theor Appl Genet. 2015 Jan;128(1):131-43. doi: 10.1007/s00122-014-2417-5. Epub 2014 Nov 4.

PMID:
25367379
6.

Haplotype variation of Green Revolution gene Rht-D1 during wheat domestication and improvement.

Zhang C, Gao L, Sun J, Jia J, Ren Z.

J Integr Plant Biol. 2014 Aug;56(8):774-80. doi: 10.1111/jipb.12197. Epub 2014 Jun 11.

PMID:
24645900
7.

Nucleotide diversity maps reveal variation in diversity among wheat genomes and chromosomes.

Akhunov ED, Akhunova AR, Anderson OD, Anderson JA, Blake N, Clegg MT, Coleman-Derr D, Conley EJ, Crossman CC, Deal KR, Dubcovsky J, Gill BS, Gu YQ, Hadam J, Heo H, Huo N, Lazo GR, Luo MC, Ma YQ, Matthews DE, McGuire PE, Morrell PL, Qualset CO, Renfro J, Tabanao D, Talbert LE, Tian C, Toleno DM, Warburton ML, You FM, Zhang W, Dvorak J.

BMC Genomics. 2010 Dec 14;11:702. doi: 10.1186/1471-2164-11-702.

8.

Population genomic and genome-wide association studies of agroclimatic traits in sorghum.

Morris GP, Ramu P, Deshpande SP, Hash CT, Shah T, Upadhyaya HD, Riera-Lizarazu O, Brown PJ, Acharya CB, Mitchell SE, Harriman J, Glaubitz JC, Buckler ES, Kresovich S.

Proc Natl Acad Sci U S A. 2013 Jan 8;110(2):453-8. doi: 10.1073/pnas.1215985110. Epub 2012 Dec 24.

9.

A SNP-Based Molecular Barcode for Characterization of Common Wheat.

Gao L, Jia J, Kong X.

PLoS One. 2016 Mar 17;11(3):e0150947. doi: 10.1371/journal.pone.0150947. eCollection 2016.

10.

High-density SNP genotyping array for hexaploid wheat and its secondary and tertiary gene pool.

Winfield MO, Allen AM, Burridge AJ, Barker GL, Benbow HR, Wilkinson PA, Coghill J, Waterfall C, Davassi A, Scopes G, Pirani A, Webster T, Brew F, Bloor C, King J, West C, Griffiths S, King I, Bentley AR, Edwards KJ.

Plant Biotechnol J. 2016 May;14(5):1195-206. doi: 10.1111/pbi.12485. Epub 2015 Oct 15.

11.

A haplotype map of allohexaploid wheat reveals distinct patterns of selection on homoeologous genomes.

Jordan KW, Wang S, Lun Y, Gardiner LJ, MacLachlan R, Hucl P, Wiebe K, Wong D, Forrest KL; IWGS Consortium., Sharpe AG, Sidebottom CH, Hall N, Toomajian C, Close T, Dubcovsky J, Akhunova A, Talbert L, Bansal UK, Bariana HS, Hayden MJ, Pozniak C, Jeddeloh JA, Hall A, Akhunov E.

Genome Biol. 2015 Feb 26;16:48. doi: 10.1186/s13059-015-0606-4.

12.

Wheat in the Mediterranean revisited--tetraploid wheat landraces assessed with elite bread wheat Single Nucleotide Polymorphism markers.

Oliveira HR, Hagenblad J, Leino MW, Leigh FJ, Lister DL, Penã-Chocarro L, Jones MK.

BMC Genet. 2014 May 8;15:54. doi: 10.1186/1471-2156-15-54.

13.

Single nucleotide polymorphism genotyping in polyploid wheat with the Illumina GoldenGate assay.

Akhunov E, Nicolet C, Dvorak J.

Theor Appl Genet. 2009 Aug;119(3):507-17. doi: 10.1007/s00122-009-1059-5. Epub 2009 May 18.

14.

Genome-wide haplotype changes produced by artificial selection during modern rice breeding in Japan.

Yonemaru J, Yamamoto T, Ebana K, Yamamoto E, Nagasaki H, Shibaya T, Yano M.

PLoS One. 2012;7(3):e32982. doi: 10.1371/journal.pone.0032982. Epub 2012 Mar 13.

15.

Unlocking the genetic diversity of Creole wheats.

Vikram P, Franco J, Burgueño-Ferreira J, Li H, Sehgal D, Saint Pierre C, Ortiz C, Sneller C, Tattaris M, Guzman C, Sansaloni CP, Fuentes-Davila G, Reynolds M, Sonders K, Singh P, Payne T, Wenzl P, Sharma A, Bains NS, Singh GP, Crossa J, Singh S.

Sci Rep. 2016 Mar 15;6:23092. doi: 10.1038/srep23092.

16.

Genome-wide patterns of nucleotide polymorphism in domesticated rice.

Caicedo AL, Williamson SH, Hernandez RD, Boyko A, Fledel-Alon A, York TL, Polato NR, Olsen KM, Nielsen R, McCouch SR, Bustamante CD, Purugganan MD.

PLoS Genet. 2007 Sep;3(9):1745-56. Epub 2007 Aug 6.

17.

Fine definition of the pedigree haplotypes of closely related rice cultivars by means of genome-wide discovery of single-nucleotide polymorphisms.

Yamamoto T, Nagasaki H, Yonemaru J, Ebana K, Nakajima M, Shibaya T, Yano M.

BMC Genomics. 2010 Apr 27;11:267. doi: 10.1186/1471-2164-11-267.

18.

Characterization of a Wheat Breeders' Array suitable for high-throughput SNP genotyping of global accessions of hexaploid bread wheat (Triticum aestivum).

Allen AM, Winfield MO, Burridge AJ, Downie RC, Benbow HR, Barker GL, Wilkinson PA, Coghill J, Waterfall C, Davassi A, Scopes G, Pirani A, Webster T, Brew F, Bloor C, Griffiths S, Bentley AR, Alda M, Jack P, Phillips AL, Edwards KJ.

Plant Biotechnol J. 2017 Mar;15(3):390-401. doi: 10.1111/pbi.12635. Epub 2016 Nov 23.

19.

Accessing complex crop genomes with next-generation sequencing.

Edwards D, Batley J, Snowdon RJ.

Theor Appl Genet. 2013 Jan;126(1):1-11. doi: 10.1007/s00122-012-1964-x. Epub 2012 Sep 5. Review.

PMID:
22948437
20.

Haplotype variation of Glu-D1 locus and the origin of Glu-D1d allele conferring superior end-use qualities in common wheat.

Dong Z, Yang Y, Li Y, Zhang K, Lou H, An X, Dong L, Gu YQ, Anderson OD, Liu X, Qin H, Wang D.

PLoS One. 2013 Sep 30;8(9):e74859. doi: 10.1371/journal.pone.0074859. eCollection 2013.

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