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Items: 1 to 20 of 171


A novel insight into Gene Ontology semantic similarity.

Xu Y, Guo M, Shi W, Liu X, Wang C.

Genomics. 2013 Jun;101(6):368-75. doi: 10.1016/j.ygeno.2013.04.010.


IntelliGO: a new vector-based semantic similarity measure including annotation origin.

Benabderrahmane S, Smail-Tabbone M, Poch O, Napoli A, Devignes MD.

BMC Bioinformatics. 2010 Dec 1;11:588. doi: 10.1186/1471-2105-11-588.


Measuring gene functional similarity based on group-wise comparison of GO terms.

Teng Z, Guo M, Liu X, Dai Q, Wang C, Xuan P.

Bioinformatics. 2013 Jun 1;29(11):1424-32. doi: 10.1093/bioinformatics/btt160.


A relation based measure of semantic similarity for Gene Ontology annotations.

Sheehan B, Quigley A, Gaudin B, Dobson S.

BMC Bioinformatics. 2008 Nov 4;9:468. doi: 10.1186/1471-2105-9-468.


Measuring semantic similarities by combining gene ontology annotations and gene co-function networks.

Peng J, Uygun S, Kim T, Wang Y, Rhee SY, Chen J.

BMC Bioinformatics. 2015 Feb 14;16:44. doi: 10.1186/s12859-015-0474-7.


A new method to measure the semantic similarity of GO terms.

Wang JZ, Du Z, Payattakool R, Yu PS, Chen CF.

Bioinformatics. 2007 May 15;23(10):1274-81.


Finding disease similarity based on implicit semantic similarity.

Mathur S, Dinakarpandian D.

J Biomed Inform. 2012 Apr;45(2):363-71. doi: 10.1016/j.jbi.2011.11.017.


Improving GO semantic similarity measures by exploring the ontology beneath the terms and modelling uncertainty.

Yang H, Nepusz T, Paccanaro A.

Bioinformatics. 2012 May 15;28(10):1383-9. doi: 10.1093/bioinformatics/bts129.


Measure the Semantic Similarity of GO Terms Using Aggregate Information Content.

Song X, Li L, Srimani PK, Yu PS, Wang JZ.

IEEE/ACM Trans Comput Biol Bioinform. 2014 May-Jun;11(3):468-76. doi: 10.1109/TCBB.2013.176.


A graph-based semantic similarity measure for the gene ontology.

Alvarez MA, Yan C.

J Bioinform Comput Biol. 2011 Dec;9(6):681-95.


GOChase-II: correcting semantic inconsistencies from Gene Ontology-based annotations for gene products.

Park YR, Kim J, Lee HW, Yoon YJ, Kim JH.

BMC Bioinformatics. 2011 Feb 15;12 Suppl 1:S40. doi: 10.1186/1471-2105-12-S1-S40.


Bi-directional semantic similarity for gene ontology to optimize biological and clinical analyses.

Bien SJ, Park CH, Shim HJ, Yang W, Kim J, Kim JH.

J Am Med Inform Assoc. 2012 Sep-Oct;19(5):765-74. doi: 10.1136/amiajnl-2011-000659.


A weighted multipath measurement based on gene ontology for estimating gene products similarity.

Liu L, Dai X, Wang H, Song W, Lu J.

J Comput Biol. 2014 Dec;21(12):964-74. doi: 10.1089/cmb.2014.0143.


HybridGO-Loc: mining hybrid features on gene ontology for predicting subcellular localization of multi-location proteins.

Wan S, Mak MW, Kung SY.

PLoS One. 2014 Mar 19;9(3):e89545. doi: 10.1371/journal.pone.0089545.


DaGO-Fun: tool for Gene Ontology-based functional analysis using term information content measures.

Mazandu GK, Mulder NJ.

BMC Bioinformatics. 2013 Sep 25;14:284. doi: 10.1186/1471-2105-14-284.


Argot2: a large scale function prediction tool relying on semantic similarity of weighted Gene Ontology terms.

Falda M, Toppo S, Pescarolo A, Lavezzo E, Di Camillo B, Facchinetti A, Cilia E, Velasco R, Fontana P.

BMC Bioinformatics. 2012 Mar 28;13 Suppl 4:S14. doi: 10.1186/1471-2105-13-S4-S14.


Gene ontology based transfer learning for protein subcellular localization.

Mei S, Fei W, Zhou S.

BMC Bioinformatics. 2011 Feb 2;12:44. doi: 10.1186/1471-2105-12-44.


Semantic particularity measure for functional characterization of gene sets using gene ontology.

Bettembourg C, Diot C, Dameron O.

PLoS One. 2014 Jan 28;9(1):e86525. doi: 10.1371/journal.pone.0086525.


Correlating information contents of gene ontology terms to infer semantic similarity of gene products.

Gan M.

Comput Math Methods Med. 2014;2014:891842. doi: 10.1155/2014/891842.


GOSemSim: an R package for measuring semantic similarity among GO terms and gene products.

Yu G, Li F, Qin Y, Bo X, Wu Y, Wang S.

Bioinformatics. 2010 Apr 1;26(7):976-8. doi: 10.1093/bioinformatics/btq064.

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