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Items: 1 to 20 of 149

1.

Validation of the curation pipeline of UniCarb-DB: building a global glycan reference MS/MS repository.

Campbell MP, Nguyen-Khuong T, Hayes CA, Flowers SA, Alagesan K, Kolarich D, Packer NH, Karlsson NG.

Biochim Biophys Acta. 2014 Jan;1844(1 Pt A):108-16. doi: 10.1016/j.bbapap.2013.04.018. Epub 2013 Apr 25.

PMID:
23624262
2.

Tandem mass spectra of glycan substructures enable the multistage mass spectrometric identification of determinants on oligosaccharides.

Everest-Dass AV, Kolarich D, Campbell MP, Packer NH.

Rapid Commun Mass Spectrom. 2013 May 15;27(9):931-9. doi: 10.1002/rcm.6527.

PMID:
23592194
3.

Structural feature ions for distinguishing N- and O-linked glycan isomers by LC-ESI-IT MS/MS.

Everest-Dass AV, Abrahams JL, Kolarich D, Packer NH, Campbell MP.

J Am Soc Mass Spectrom. 2013 Jun;24(6):895-906. doi: 10.1007/s13361-013-0610-4. Epub 2013 Apr 20.

PMID:
23605685
4.

UniCarb-DB: a database resource for glycomic discovery.

Hayes CA, Karlsson NG, Struwe WB, Lisacek F, Rudd PM, Packer NH, Campbell MP.

Bioinformatics. 2011 May 1;27(9):1343-4. doi: 10.1093/bioinformatics/btr137. Epub 2011 Mar 12.

PMID:
21398669
5.

A Machine Learning Based Approach to de novo Sequencing of Glycans from Tandem Mass Spectrometry Spectrum.

Kumozaki S, Sato K, Sakakibara Y.

IEEE/ACM Trans Comput Biol Bioinform. 2015 Nov-Dec;12(6):1267-74. doi: 10.1109/TCBB.2015.2430317.

PMID:
26671799
6.

Open source libraries and frameworks for mass spectrometry based proteomics: a developer's perspective.

Perez-Riverol Y, Wang R, Hermjakob H, Müller M, Vesada V, Vizcaíno JA.

Biochim Biophys Acta. 2014 Jan;1844(1 Pt A):63-76. doi: 10.1016/j.bbapap.2013.02.032. Epub 2013 Mar 1. Review.

7.

A platform for the structural characterization of glycans enzymatically released from glycosphingolipids extracted from tissue and cells.

Anugraham M, Everest-Dass AV, Jacob F, Packer NH.

Rapid Commun Mass Spectrom. 2015 Apr 15;29(7):545-61. doi: 10.1002/rcm.7130.

PMID:
26212272
8.

GlyQ-IQ: glycomics quintavariate-informed quantification with high-performance computing and GlycoGrid 4D visualization.

Kronewitter SR, Slysz GW, Marginean I, Hagler CD, LaMarche BL, Zhao R, Harris MY, Monroe ME, Polyukh CA, Crowell KL, Fillmore TL, Carlson TS, Camp DG 2nd, Moore RJ, Payne SH, Anderson GA, Smith RD.

Anal Chem. 2014 Jul 1;86(13):6268-76. doi: 10.1021/ac501492f. Epub 2014 Jun 13.

9.
10.

Two-dimensional HPLC separation with reverse-phase-nano-LC-MS/MS for the characterization of glycan pools after labeling with 2-aminobenzamide.

Wuhrer M, Koeleman CA, Deelder AM.

Methods Mol Biol. 2009;534:79-91. doi: 10.1007/978-1-59745-022-5_6. Review.

PMID:
19277534
11.

GPQuest: A Spectral Library Matching Algorithm for Site-Specific Assignment of Tandem Mass Spectra to Intact N-glycopeptides.

Toghi Eshghi S, Shah P, Yang W, Li X, Zhang H.

Anal Chem. 2015;87(10):5181-8. doi: 10.1021/acs.analchem.5b00024. Epub 2015 May 6.

12.

Comparison of the methods for profiling glycoprotein glycans--HUPO Human Disease Glycomics/Proteome Initiative multi-institutional study.

Wada Y, Azadi P, Costello CE, Dell A, Dwek RA, Geyer H, Geyer R, Kakehi K, Karlsson NG, Kato K, Kawasaki N, Khoo KH, Kim S, Kondo A, Lattova E, Mechref Y, Miyoshi E, Nakamura K, Narimatsu H, Novotny MV, Packer NH, Perreault H, Peter-Katalinic J, Pohlentz G, Reinhold VN, Rudd PM, Suzuki A, Taniguchi N.

Glycobiology. 2007 Apr;17(4):411-22. Epub 2007 Jan 12. Erratum in: Glycobiology. 2007 May;17(5):10G.

PMID:
17223647
13.

GlycoMaster DB: software to assist the automated identification of N-linked glycopeptides by tandem mass spectrometry.

He L, Xin L, Shan B, Lajoie GA, Ma B.

J Proteome Res. 2014 Sep 5;13(9):3881-95. doi: 10.1021/pr401115y. Epub 2014 Aug 25.

PMID:
25113421
14.

Structural analysis of N- and O-glycans released from glycoproteins.

Jensen PH, Karlsson NG, Kolarich D, Packer NH.

Nat Protoc. 2012 Jun 7;7(7):1299-310. doi: 10.1038/nprot.2012.063.

PMID:
22678433
15.

Integrated mass spectrometry-based analysis of plasma glycoproteins and their glycan modifications.

Wang H, Wong CH, Chin A, Taguchi A, Taylor A, Hanash S, Sekiya S, Takahashi H, Murase M, Kajihara S, Iwamoto S, Tanaka K.

Nat Protoc. 2011 Mar;6(3):253-69. doi: 10.1038/nprot.2010.176. Epub 2011 Feb 10.

16.
17.

Enhanced glycan nanoprofiling by weak anion exchange preparative chromatography, mild acid desialylation, and nanoliquid chromatography-mass spectrometry with nanofluorescence detection.

Kalay H, Ambrosini M, Chiodo F, van Kooyk Y, García-Vallejo JJ.

Electrophoresis. 2013 Aug;34(16):2350-6. doi: 10.1002/elps.201200657. Epub 2013 Jul 26.

PMID:
23893432
19.

Enhancing MS(n) mass spectrometry strategy for carbohydrate analysis: A b2 ion spectral library.

Xue J, Laine RA, Matta KL.

J Proteomics. 2015 Jan 1;112:224-49. doi: 10.1016/j.jprot.2014.07.013. Epub 2014 Aug 29.

PMID:
25175058
20.

Isomer-Specific Analysis of Released N-Glycans by LC-ESI MS/MS with Porous Graphitized Carbon.

Kolarich D, Windwarder M, Alagesan K, Altmann F.

Methods Mol Biol. 2015;1321:427-35. doi: 10.1007/978-1-4939-2760-9_29.

PMID:
26082239

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