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Items: 1 to 20 of 121

1.

RNA-Seq analyses reveal the order of tRNA processing events and the maturation of C/D box and CRISPR RNAs in the hyperthermophile Methanopyrus kandleri.

Su AA, Tripp V, Randau L.

Nucleic Acids Res. 2013 Jul;41(12):6250-8. doi: 10.1093/nar/gkt317. Epub 2013 Apr 25.

2.

RNA processing in the minimal organism Nanoarchaeum equitans.

Randau L.

Genome Biol. 2012 Jul 18;13(7):R63. doi: 10.1186/gb-2012-13-7-r63.

3.

C/D box sRNA, CRISPR RNA and tRNA processing in an archaeon with a minimal fragmented genome.

Richter H, Mohr S, Randau L.

Biochem Soc Trans. 2013 Feb 1;41(1):411-5. doi: 10.1042/BST20120276. Review.

PMID:
23356320
4.

A cytidine deaminase edits C to U in transfer RNAs in Archaea.

Randau L, Stanley BJ, Kohlway A, Mechta S, Xiong Y, Söll D.

Science. 2009 May 1;324(5927):657-9. doi: 10.1126/science.1170123.

5.

A-to-I and C-to-U editing within transfer RNAs.

Su AA, Randau L.

Biochemistry (Mosc). 2011 Aug;76(8):932-7. doi: 10.1134/S0006297911080098. Review.

PMID:
22022967
6.

Transcriptome-wide discovery of circular RNAs in Archaea.

Danan M, Schwartz S, Edelheit S, Sorek R.

Nucleic Acids Res. 2012 Apr;40(7):3131-42. doi: 10.1093/nar/gkr1009. Epub 2011 Dec 2.

7.

High throughput sequencing reveals a plethora of small RNAs including tRNA derived fragments in Haloferax volcanii.

Heyer R, Dörr M, Jellen-Ritter A, Späth B, Babski J, Jaschinski K, Soppa J, Marchfelder A.

RNA Biol. 2012 Jul;9(7):1011-8. doi: 10.4161/rna.20826. Epub 2012 Jul 1.

8.

RNA-Seq analyses reveal CRISPR RNA processing and regulation patterns.

Zoephel J, Randau L.

Biochem Soc Trans. 2013 Dec;41(6):1459-63. doi: 10.1042/BST20130129. Review.

PMID:
24256237
9.

Evolution of small guide RNA genes in hyperthermophilic archaea.

Randau L.

Ann N Y Acad Sci. 2015 Apr;1341:188-93. doi: 10.1111/nyas.12643. Epub 2015 Jan 13.

PMID:
25585508
10.

Transfer RNA genes from the hyperthermophilic Archaeon, Methanopyrus kandleri.

Palmer JR, Baltrus T, Reeve JN, Daniels CJ.

Biochim Biophys Acta. 1992 Oct 20;1132(3):315-8.

PMID:
1384711
11.

Archaeal 3'-phosphate RNA splicing ligase characterization identifies the missing component in tRNA maturation.

Englert M, Sheppard K, Aslanian A, Yates JR 3rd, Söll D.

Proc Natl Acad Sci U S A. 2011 Jan 25;108(4):1290-5. doi: 10.1073/pnas.1018307108. Epub 2011 Jan 5.

12.

Posttranscriptional modification of transfer RNA in the submarine hyperthermophile Pyrolobus fumarii.

McCloskey JA, Liu XH, Crain PF, Bruenger E, Guymon R, Hashizume T, Stetter KO.

Nucleic Acids Symp Ser. 2000;(44):267-8.

PMID:
12903371
13.
14.
15.

Meta-analysis of small RNA-sequencing errors reveals ubiquitous post-transcriptional RNA modifications.

Ebhardt HA, Tsang HH, Dai DC, Liu Y, Bostan B, Fahlman RP.

Nucleic Acids Res. 2009 May;37(8):2461-70. doi: 10.1093/nar/gkp093. Epub 2009 Mar 2.

16.

Assembly of the archaeal box C/D sRNP can occur via alternative pathways and requires temperature-facilitated sRNA remodeling.

Gagnon KT, Zhang X, Agris PF, Maxwell ES.

J Mol Biol. 2006 Oct 6;362(5):1025-42. Epub 2006 Aug 4.

PMID:
16949610
17.

N6-Acetyladenosine: a new modified nucleoside from Methanopyrus kandleri tRNA.

Sauerwald A, Sitaramaiah D, McCloskey JA, Söll D, Crain PF.

FEBS Lett. 2005 May 23;579(13):2807-10. Epub 2005 Apr 21.

18.

Small regulatory RNAs in Archaea.

Babski J, Maier LK, Heyer R, Jaschinski K, Prasse D, Jäger D, Randau L, Schmitz RA, Marchfelder A, Soppa J.

RNA Biol. 2014;11(5):484-93. Epub 2014 Mar 31. Review.

19.

Functional requirement for symmetric assembly of archaeal box C/D small ribonucleoprotein particles.

Rashid R, Aittaleb M, Chen Q, Spiegel K, Demeler B, Li H.

J Mol Biol. 2003 Oct 17;333(2):295-306. Erratum in: J Mol Biol. 2004 Sep 24;342(4):1347.

PMID:
14529617
20.

Sequential 2'-O-methylation of archaeal pre-tRNATrp nucleotides is guided by the intron-encoded but trans-acting box C/D ribonucleoprotein of pre-tRNA.

Singh SK, Gurha P, Tran EJ, Maxwell ES, Gupta R.

J Biol Chem. 2004 Nov 12;279(46):47661-71. Epub 2004 Sep 3.

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