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Items: 1 to 20 of 168

1.

Population genomics and transcriptional consequences of regulatory motif variation in globally diverse Saccharomyces cerevisiae strains.

Connelly CF, Skelly DA, Dunham MJ, Akey JM.

Mol Biol Evol. 2013 Jul;30(7):1605-13. doi: 10.1093/molbev/mst073. Epub 2013 Apr 25.

2.

Sequencing and comparison of yeast species to identify genes and regulatory elements.

Kellis M, Patterson N, Endrizzi M, Birren B, Lander ES.

Nature. 2003 May 15;423(6937):241-54.

PMID:
12748633
3.

Personal and population genomics of human regulatory variation.

Vernot B, Stergachis AB, Maurano MT, Vierstra J, Neph S, Thurman RE, Stamatoyannopoulos JA, Akey JM.

Genome Res. 2012 Sep;22(9):1689-97. doi: 10.1101/gr.134890.111.

4.

Evolution and selection in yeast promoters: analyzing the combined effect of diverse transcription factor binding sites.

Raijman D, Shamir R, Tanay A.

PLoS Comput Biol. 2008 Jan;4(1):e7. doi: 10.1371/journal.pcbi.0040007.

5.

The evolution of gene expression QTL in Saccharomyces cerevisiae.

Ronald J, Akey JM.

PLoS One. 2007 Aug 1;2(7):e678.

6.

Nucleotide variation of regulatory motifs may lead to distinct expression patterns.

Segal L, Lapidot M, Solan Z, Ruppin E, Pilpel Y, Horn D.

Bioinformatics. 2007 Jul 1;23(13):i440-9.

PMID:
17646329
7.

Position specific variation in the rate of evolution in transcription factor binding sites.

Moses AM, Chiang DY, Kellis M, Lander ES, Eisen MB.

BMC Evol Biol. 2003 Aug 28;3:19. Epub 2003 Aug 28.

8.

Functional characterization of variations on regulatory motifs.

Lapidot M, Mizrahi-Man O, Pilpel Y.

PLoS Genet. 2008 Mar 7;4(3):e1000018. doi: 10.1371/journal.pgen.1000018. Erratum in: PLoS Genet. 2008 Jun;4(6). doi: 10.1371/annotation/99662172-8f18-4bfb-ad0f-79ed1d69fffd. Michal, Lapidot [corrected to Lapidot, Michal].

9.

YeTFaSCo: a database of evaluated yeast transcription factor sequence specificities.

de Boer CG, Hughes TR.

Nucleic Acids Res. 2012 Jan;40(Database issue):D169-79. doi: 10.1093/nar/gkr993. Epub 2011 Nov 18.

10.

Correlating gene expression variation with cis-regulatory polymorphism in Saccharomyces cerevisiae.

Chen K, van Nimwegen E, Rajewsky N, Siegal ML.

Genome Biol Evol. 2010;2:697-707. doi: 10.1093/gbe/evq054. Epub 2010 Sep 9.

11.

Natural variation in non-coding regions underlying phenotypic diversity in budding yeast.

Salinas F, de Boer CG, Abarca V, García V, Cuevas M, Araos S, Larrondo LF, Martínez C, Cubillos FA.

Sci Rep. 2016 Feb 22;6:21849. doi: 10.1038/srep21849.

12.

Local regulatory variation in Saccharomyces cerevisiae.

Ronald J, Brem RB, Whittle J, Kruglyak L.

PLoS Genet. 2005 Aug;1(2):e25. Epub 2005 Aug 19.

13.

Diversification at transcription factor binding sites within a species and the implications for environmental adaptation.

Ames RM, Lovell SC.

Mol Biol Evol. 2011 Dec;28(12):3331-44. doi: 10.1093/molbev/msr167. Epub 2011 Jun 20.

PMID:
21693437
14.

Functional characterization of motif sequences under purifying selection.

Chen DH, Chang AY, Liao BY, Yeang CH.

Nucleic Acids Res. 2013 Feb 1;41(4):2105-20. doi: 10.1093/nar/gks1456. Epub 2013 Jan 8.

15.

Genome-wide expression profiling, in vivo DNA binding analysis, and probabilistic motif prediction reveal novel Abf1 target genes during fermentation, respiration, and sporulation in yeast.

Schlecht U, Erb I, Demougin P, Robine N, Borde V, van Nimwegen E, Nicolas A, Primig M.

Mol Biol Cell. 2008 May;19(5):2193-207. doi: 10.1091/mbc.E07-12-1242. Epub 2008 Feb 27.

16.

cis- and trans-acting regulatory elements of the yeast URA3 promoter.

Roy A, Exinger F, Losson R.

Mol Cell Biol. 1990 Oct;10(10):5257-70.

17.

Computational discovery of transcriptional regulatory modules in fungal ribosome biogenesis genes reveals novel sequence and function patterns.

Martyanov V, Gross RH.

PLoS One. 2013;8(3):e59851. doi: 10.1371/journal.pone.0059851. Epub 2013 Mar 29.

18.

A catalog of neutral and deleterious polymorphism in yeast.

Doniger SW, Kim HS, Swain D, Corcuera D, Williams M, Yang SP, Fay JC.

PLoS Genet. 2008 Aug 29;4(8):e1000183. doi: 10.1371/journal.pgen.1000183.

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