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Imprinted expression of genes and small RNA is associated with localized hypomethylation of the maternal genome in rice endosperm.

Rodrigues JA, Ruan R, Nishimura T, Sharma MK, Sharma R, Ronald PC, Fischer RL, Zilberman D.

Proc Natl Acad Sci U S A. 2013 May 7;110(19):7934-9. doi: 10.1073/pnas.1306164110. Epub 2013 Apr 23.


Parent-of-origin effects on gene expression and DNA methylation in the maize endosperm.

Waters AJ, Makarevitch I, Eichten SR, Swanson-Wagner RA, Yeh CT, Xu W, Schnable PS, Vaughn MW, Gehring M, Springer NM.

Plant Cell. 2011 Dec;23(12):4221-33. doi: 10.1105/tpc.111.092668. Epub 2011 Dec 23.


A genome-wide survey of imprinted genes in rice seeds reveals imprinting primarily occurs in the endosperm.

Luo M, Taylor JM, Spriggs A, Zhang H, Wu X, Russell S, Singh M, Koltunow A.

PLoS Genet. 2011 Jun;7(6):e1002125. doi: 10.1371/journal.pgen.1002125. Epub 2011 Jun 23.


Both maternally and paternally imprinted genes regulate seed development in rice.

Yuan J, Chen S, Jiao W, Wang L, Wang L, Ye W, Lu J, Hong D, You S, Cheng Z, Yang DL, Chen ZJ.

New Phytol. 2017 Oct;216(2):373-387. doi: 10.1111/nph.14510. Epub 2017 Mar 13.


DNA demethylation is initiated in the central cells of Arabidopsis and rice.

Park K, Kim MY, Vickers M, Park JS, Hyun Y, Okamoto T, Zilberman D, Fischer RL, Feng X, Choi Y, Scholten S.

Proc Natl Acad Sci U S A. 2016 Dec 27;113(52):15138-15143. doi: 10.1073/pnas.1619047114. Epub 2016 Dec 12.


Identification of imprinted genes subject to parent-of-origin specific expression in Arabidopsis thaliana seeds.

McKeown PC, Laouielle-Duprat S, Prins P, Wolff P, Schmid MW, Donoghue MT, Fort A, Duszynska D, Comte A, Lao NT, Wennblom TJ, Smant G, Köhler C, Grossniklaus U, Spillane C.

BMC Plant Biol. 2011 Aug 12;11:113. doi: 10.1186/1471-2229-11-113.


Genome-wide high resolution parental-specific DNA and histone methylation maps uncover patterns of imprinting regulation in maize.

Zhang M, Xie S, Dong X, Zhao X, Zeng B, Chen J, Li H, Yang W, Zhao H, Wang G, Chen Z, Sun S, Hauck A, Jin W, Lai J.

Genome Res. 2014 Jan;24(1):167-76. doi: 10.1101/gr.155879.113. Epub 2013 Oct 16.


Epigenetic mechanisms underlying genomic imprinting in plants.

Köhler C, Wolff P, Spillane C.

Annu Rev Plant Biol. 2012;63:331-52. doi: 10.1146/annurev-arplant-042811-105514. Epub 2012 Jan 30. Review.


Genome-wide demethylation of Arabidopsis endosperm.

Hsieh TF, Ibarra CA, Silva P, Zemach A, Eshed-Williams L, Fischer RL, Zilberman D.

Science. 2009 Jun 12;324(5933):1451-4. doi: 10.1126/science.1172417.


High-resolution analysis of parent-of-origin allelic expression in the Arabidopsis Endosperm.

Wolff P, Weinhofer I, Seguin J, Roszak P, Beisel C, Donoghue MT, Spillane C, Nordborg M, Rehmsmeier M, Köhler C.

PLoS Genet. 2011 Jun;7(6):e1002126. doi: 10.1371/journal.pgen.1002126. Epub 2011 Jun 16.


Control of Paternally Expressed Imprinted UPWARD CURLY LEAF1, a Gene Encoding an F-Box Protein That Regulates CURLY LEAF Polycomb Protein, in the Arabidopsis Endosperm.

Jeong CW, Park GT, Yun H, Hsieh TF, Choi YD, Choi Y, Lee JS.

PLoS One. 2015 Feb 17;10(2):e0117431. doi: 10.1371/journal.pone.0117431. eCollection 2015.


Genome-wide screen of genes imprinted in sorghum endosperm, and the roles of allelic differential cytosine methylation.

Zhang M, Li N, He W, Zhang H, Yang W, Liu B.

Plant J. 2016 Feb;85(3):424-36. doi: 10.1111/tpj.13116.


Genomic analysis of parent-of-origin allelic expression in Arabidopsis thaliana seeds.

Gehring M, Missirian V, Henikoff S.

PLoS One. 2011;6(8):e23687. doi: 10.1371/journal.pone.0023687. Epub 2011 Aug 17.


Local DNA hypomethylation activates genes in rice endosperm.

Zemach A, Kim MY, Silva P, Rodrigues JA, Dotson B, Brooks MD, Zilberman D.

Proc Natl Acad Sci U S A. 2010 Oct 26;107(43):18729-34. doi: 10.1073/pnas.1009695107. Epub 2010 Oct 11.


Genomic imprinting: insights from plants.

Gehring M.

Annu Rev Genet. 2013;47:187-208. doi: 10.1146/annurev-genet-110711-155527. Epub 2013 Aug 30. Review.


Dynamic expression of imprinted genes associates with maternally controlled nutrient allocation during maize endosperm development.

Xin M, Yang R, Li G, Chen H, Laurie J, Ma C, Wang D, Yao Y, Larkins BA, Sun Q, Yadegari R, Wang X, Ni Z.

Plant Cell. 2013 Sep;25(9):3212-27. doi: 10.1105/tpc.113.115592. Epub 2013 Sep 20.


Extensive demethylation of repetitive elements during seed development underlies gene imprinting.

Gehring M, Bubb KL, Henikoff S.

Science. 2009 Jun 12;324(5933):1447-51. doi: 10.1126/science.1171609.


Regulation of imprinted gene expression in Arabidopsis endosperm.

Hsieh TF, Shin J, Uzawa R, Silva P, Cohen S, Bauer MJ, Hashimoto M, Kirkbride RC, Harada JJ, Zilberman D, Fischer RL.

Proc Natl Acad Sci U S A. 2011 Feb 1;108(5):1755-62. doi: 10.1073/pnas.1019273108. Epub 2011 Jan 21.


Epigenetic resetting of a gene imprinted in plant embryos.

Jahnke S, Scholten S.

Curr Biol. 2009 Oct 13;19(19):1677-81. doi: 10.1016/j.cub.2009.08.053. Epub 2009 Sep 24.


Specialized technologies for epigenetics in plants.

Xiao W.

Methods Mol Biol. 2012;925:231-47. doi: 10.1007/978-1-62703-011-3_16.


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