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Items: 1 to 20 of 54

1.

Sequencing, de novo assembly, annotation and SSR and SNP detection of sabaigrass (Eulaliopsis binata) transcriptome.

Zou D, Chen X, Zou D.

Genomics. 2013 Jul;102(1):57-62. doi: 10.1016/j.ygeno.2013.02.014. Epub 2013 Apr 15.

2.

Transcriptome analysis of the mud crab (Scylla paramamosain) by 454 deep sequencing: assembly, annotation, and marker discovery.

Ma H, Ma C, Li S, Jiang W, Li X, Liu Y, Ma L.

PLoS One. 2014 Jul 23;9(7):e102668. doi: 10.1371/journal.pone.0102668. eCollection 2014.

3.

Transcriptome de novo assembly sequencing and analysis of the toxic dinoflagellate Alexandrium catenella using the Illumina platform.

Zhang S, Sui Z, Chang L, Kang K, Ma J, Kong F, Zhou W, Wang J, Guo L, Geng H, Zhong J, Ma Q.

Gene. 2014 Mar 10;537(2):285-93. doi: 10.1016/j.gene.2013.12.041. Epub 2014 Jan 15.

PMID:
24440238
4.

De novo transcriptome assembly and polymorphism detection in the flowering plant Silene vulgaris (Caryophyllaceae).

Sloan DB, Keller SR, Berardi AE, Sanderson BJ, Karpovich JF, Taylor DR.

Mol Ecol Resour. 2012 Mar;12(2):333-43. doi: 10.1111/j.1755-0998.2011.03079.x. Epub 2011 Oct 17.

PMID:
21999839
5.

Characterization of Liaoning cashmere goat transcriptome: sequencing, de novo assembly, functional annotation and comparative analysis.

Liu H, Wang T, Wang J, Quan F, Zhang Y.

PLoS One. 2013 Oct 9;8(10):e77062. doi: 10.1371/journal.pone.0077062. eCollection 2013.

6.

De novo transcriptome assembly of pummelo and molecular marker development.

Liang M, Yang X, Li H, Su S, Yi H, Chai L, Deng X.

PLoS One. 2015 Mar 23;10(3):e0120615. doi: 10.1371/journal.pone.0120615. eCollection 2015.

7.

Transcriptome analysis in sheepgrass (Leymus chinensis): a dominant perennial grass of the Eurasian Steppe.

Chen S, Huang X, Yan X, Liang Y, Wang Y, Li X, Peng X, Ma X, Zhang L, Cai Y, Ma T, Cheng L, Qi D, Zheng H, Yang X, Li X, Liu G.

PLoS One. 2013 Jul 4;8(7):e67974. doi: 10.1371/journal.pone.0067974. Print 2013.

8.
9.

Discovery of high-confidence single nucleotide polymorphisms from large-scale de novo analysis of leaf transcripts of Aegilops tauschii, a wild wheat progenitor.

Iehisa JC, Shimizu A, Sato K, Nasuda S, Takumi S.

DNA Res. 2012 Dec;19(6):487-97. doi: 10.1093/dnares/dss028. Epub 2012 Nov 2.

10.

Single nucleotide polymorphism isolated from a novel EST dataset in garden asparagus (Asparagus officinalis L.).

Mercati F, Riccardi P, Leebens-Mack J, Abenavoli MR, Falavigna A, Sunseri F.

Plant Sci. 2013 Apr;203-204:115-23. doi: 10.1016/j.plantsci.2013.01.002. Epub 2013 Jan 16.

PMID:
23415335
11.

Transcriptome analysis and SSR/SNP markers information of the blunt snout bream (Megalobrama amblycephala).

Gao Z, Luo W, Liu H, Zeng C, Liu X, Yi S, Wang W.

PLoS One. 2012;7(8):e42637. doi: 10.1371/journal.pone.0042637. Epub 2012 Aug 6.

12.

De novo assembly, functional annotation and comparative analysis of Withania somnifera leaf and root transcriptomes to identify putative genes involved in the withanolides biosynthesis.

Gupta P, Goel R, Pathak S, Srivastava A, Singh SP, Sangwan RS, Asif MH, Trivedi PK.

PLoS One. 2013 May 8;8(5):e62714. doi: 10.1371/journal.pone.0062714. Print 2013.

13.

De novo assembly and characterization of the transcriptome, and development of SSR markers in wax gourd (Benicasa hispida).

Jiang B, Xie D, Liu W, Peng Q, He X.

PLoS One. 2013 Aug 8;8(8):e71054. doi: 10.1371/journal.pone.0071054. eCollection 2013.

14.

De novo assembly of mud loach (Misgurnus anguillicaudatus) skin transcriptome to identify putative genes involved in immunity and epidermal mucus secretion.

Long Y, Li Q, Zhou B, Song G, Li T, Cui Z.

PLoS One. 2013;8(2):e56998. doi: 10.1371/journal.pone.0056998. Epub 2013 Feb 20.

15.

Analysis of the Dendrobium officinale transcriptome reveals putative alkaloid biosynthetic genes and genetic markers.

Guo X, Li Y, Li C, Luo H, Wang L, Qian J, Luo X, Xiang L, Song J, Sun C, Xu H, Yao H, Chen S.

Gene. 2013 Sep 15;527(1):131-8. doi: 10.1016/j.gene.2013.05.073. Epub 2013 Jun 10.

PMID:
23756193
16.

A comprehensive transcriptome provides candidate genes for sex determination/differentiation and SSR/SNP markers in yellow catfish.

Chen X, Mei J, Wu J, Jing J, Ma W, Zhang J, Dan C, Wang W, Gui JF.

Mar Biotechnol (NY). 2015 Apr;17(2):190-8. doi: 10.1007/s10126-014-9607-7. Epub 2014 Nov 18.

PMID:
25403497
17.

Next-generation sequencing of the Chrysanthemum nankingense (Asteraceae) transcriptome permits large-scale unigene assembly and SSR marker discovery.

Wang H, Jiang J, Chen S, Qi X, Peng H, Li P, Song A, Guan Z, Fang W, Liao Y, Chen F.

PLoS One. 2013 Apr 23;8(4):e62293. doi: 10.1371/journal.pone.0062293. Print 2013.

18.

De novo transcriptome assembly for the tropical grass Panicum maximum Jacq.

Toledo-Silva G, Cardoso-Silva CB, Jank L, Souza AP.

PLoS One. 2013 Jul 29;8(7):e70781. doi: 10.1371/journal.pone.0070781. Print 2013.

19.

De novo characterization of the Dialeurodes citri transcriptome: mining genes involved in stress resistance and simple sequence repeats (SSRs) discovery.

Chen EH, Wei DD, Shen GM, Yuan GR, Bai PP, Wang JJ.

Insect Mol Biol. 2014 Feb;23(1):52-66. doi: 10.1111/imb.12060. Epub 2013 Oct 27.

PMID:
24164346
20.

Transcriptome sequencing of field pea and faba bean for discovery and validation of SSR genetic markers.

Kaur S, Pembleton LW, Cogan NO, Savin KW, Leonforte T, Paull J, Materne M, Forster JW.

BMC Genomics. 2012 Mar 20;13:104. doi: 10.1186/1471-2164-13-104.

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