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Items: 1 to 20 of 148

1.

Divergence of mammalian higher order chromatin structure is associated with developmental loci.

Chambers EV, Bickmore WA, Semple CA.

PLoS Comput Biol. 2013 Apr;9(4):e1003017. doi: 10.1371/journal.pcbi.1003017.

2.

Chromatin structure and evolution in the human genome.

Prendergast JG, Campbell H, Gilbert N, Dunlop MG, Bickmore WA, Semple CA.

BMC Evol Biol. 2007 May 9;7:72.

3.

Topological domains in mammalian genomes identified by analysis of chromatin interactions.

Dixon JR, Selvaraj S, Yue F, Kim A, Li Y, Shen Y, Hu M, Liu JS, Ren B.

Nature. 2012 Apr 11;485(7398):376-80. doi: 10.1038/nature11082.

4.

Inter-chromosomal contact networks provide insights into Mammalian chromatin organization.

Kaufmann S, Fuchs C, Gonik M, Khrameeva EE, Mironov AA, Frishman D.

PLoS One. 2015 May 11;10(5):e0126125. doi: 10.1371/journal.pone.0126125.

5.

Maintenance of transposon-free regions throughout vertebrate evolution.

Simons C, Makunin IV, Pheasant M, Mattick JS.

BMC Genomics. 2007 Dec 20;8:470.

6.

Gene properties and chromatin state influence the accumulation of transposable elements in genes.

Zhang Y, Mager DL.

PLoS One. 2012;7(1):e30158. doi: 10.1371/journal.pone.0030158.

7.

Evolutionarily conserved replication timing profiles predict long-range chromatin interactions and distinguish closely related cell types.

Ryba T, Hiratani I, Lu J, Itoh M, Kulik M, Zhang J, Schulz TC, Robins AJ, Dalton S, Gilbert DM.

Genome Res. 2010 Jun;20(6):761-70. doi: 10.1101/gr.099655.109.

8.

Genomic characterization of the mouse ribosomal DNA locus.

Zentner GE, Balow SA, Scacheri PC.

G3 (Bethesda). 2014 Feb 19;4(2):243-54. doi: 10.1534/g3.113.009290.

9.

Human genome replication proceeds through four chromatin states.

Julienne H, Zoufir A, Audit B, Arneodo A.

PLoS Comput Biol. 2013;9(10):e1003233. doi: 10.1371/journal.pcbi.1003233.

10.

Comparative genomic sequencing reveals a strikingly similar architecture of a conserved syntenic region on human chromosome 11p15.3 (including gene ST5) and mouse chromosome 7.

Amid C, Bahr A, Mujica A, Sampson N, Bikar SE, Winterpacht A, Zabel B, Hankeln T, Schmidt ER.

Cytogenet Cell Genet. 2001;93(3-4):284-90.

PMID:
11528127
11.

Evolutionary emergence of microRNAs in human embryonic stem cells.

Cao H, Yang CS, Rana TM.

PLoS One. 2008 Jul 30;3(7):e2820. doi: 10.1371/journal.pone.0002820.

12.

Divergent whole-genome methylation maps of human and chimpanzee brains reveal epigenetic basis of human regulatory evolution.

Zeng J, Konopka G, Hunt BG, Preuss TM, Geschwind D, Yi SV.

Am J Hum Genet. 2012 Sep 7;91(3):455-65. doi: 10.1016/j.ajhg.2012.07.024.

13.
14.

Systematic analysis of alternative first exons in plant genomes.

Chen WH, Lv G, Lv C, Zeng C, Hu S.

BMC Plant Biol. 2007 Oct 17;7:55.

15.

Differential expansion of zinc-finger transcription factor loci in homologous human and mouse gene clusters.

Shannon M, Hamilton AT, Gordon L, Branscomb E, Stubbs L.

Genome Res. 2003 Jun;13(6A):1097-110.

16.
17.

Histone h1 depletion impairs embryonic stem cell differentiation.

Zhang Y, Cooke M, Panjwani S, Cao K, Krauth B, Ho PY, Medrzycki M, Berhe DT, Pan C, McDevitt TC, Fan Y.

PLoS Genet. 2012;8(5):e1002691. doi: 10.1371/journal.pgen.1002691.

18.

Characterization of evolutionary rates and constraints in three Mammalian genomes.

Cooper GM, Brudno M, Stone EA, Dubchak I, Batzoglou S, Sidow A.

Genome Res. 2004 Apr;14(4):539-48.

19.
20.

Global similarity and local divergence in human and mouse gene co-expression networks.

Tsaparas P, Mariño-Ramírez L, Bodenreider O, Koonin EV, Jordan IK.

BMC Evol Biol. 2006 Sep 12;6:70.

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