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Items: 1 to 20 of 96

1.

A two-step similarity-based method for prediction of drug's target group.

Chen L, Zeng WM.

Protein Pept Lett. 2013 Mar;20(3):364-70.

PMID:
23570053
2.

Network predicting drug's anatomical therapeutic chemical code.

Wang YC, Chen SL, Deng NY, Wang Y.

Bioinformatics. 2013 May 15;29(10):1317-24. doi: 10.1093/bioinformatics/btt158. Epub 2013 Apr 5.

PMID:
23564845
3.

[Prediction of network drug target based on improved model of bipartite graph valuation].

Liu X, Lu P, Zuo X, Chen J, Yang H, Yang Y, Gao Y.

Zhongguo Zhong Yao Za Zhi. 2012 Jan;37(2):125-9. Chinese.

PMID:
22737836
4.
5.

Drug-target interaction prediction by random walk on the heterogeneous network.

Chen X, Liu MX, Yan GY.

Mol Biosyst. 2012 Jul 6;8(7):1970-8. doi: 10.1039/c2mb00002d. Epub 2012 Apr 26.

PMID:
22538619
6.

Prediction of drug-target interaction networks from the integration of chemical and genomic spaces.

Yamanishi Y, Araki M, Gutteridge A, Honda W, Kanehisa M.

Bioinformatics. 2008 Jul 1;24(13):i232-40. doi: 10.1093/bioinformatics/btn162.

7.

Prediction of drug target groups based on chemical-chemical similarities and chemical-chemical/protein connections.

Chen L, Lu J, Luo X, Feng KY.

Biochim Biophys Acta. 2014 Jan;1844(1 Pt B):207-13. doi: 10.1016/j.bbapap.2013.05.021. Epub 2013 Jun 1.

PMID:
23732562
8.

Cause-effect relationships in medicine: a protein network perspective.

Fliri AF, Loging WT, Volkmann RA.

Trends Pharmacol Sci. 2010 Nov;31(11):547-55. doi: 10.1016/j.tips.2010.07.005. Epub 2010 Aug 31.

PMID:
20810173
9.

Similarity metrics for ligands reflecting the similarity of the target proteins.

Schuffenhauer A, Floersheim P, Acklin P, Jacoby E.

J Chem Inf Comput Sci. 2003 Mar-Apr;43(2):391-405.

PMID:
12653501
10.

Supervised prediction of drug-target interactions using bipartite local models.

Bleakley K, Yamanishi Y.

Bioinformatics. 2009 Sep 15;25(18):2397-403. doi: 10.1093/bioinformatics/btp433. Epub 2009 Jul 15.

11.

Drug-target interaction prediction from chemical, genomic and pharmacological data in an integrated framework.

Yamanishi Y, Kotera M, Kanehisa M, Goto S.

Bioinformatics. 2010 Jun 15;26(12):i246-54. doi: 10.1093/bioinformatics/btq176.

12.

Network-based characterization of drug-regulated genes, drug targets, and toxicity.

Kotlyar M, Fortney K, Jurisica I.

Methods. 2012 Aug;57(4):499-507. doi: 10.1016/j.ymeth.2012.06.003. Epub 2012 Jun 27. Review.

13.

Double iterative optimisation for metabolic network-based drug target identification.

Song B, Sridhar P, Kahveci T, Ranka S.

Int J Data Min Bioinform. 2009;3(2):124-44.

PMID:
19517985
14.

Finding the targets of a drug by integration of gene expression data with a protein interaction network.

Laenen G, Thorrez L, Börnigen D, Moreau Y.

Mol Biosyst. 2013 Jul;9(7):1676-85. doi: 10.1039/c3mb25438k. Epub 2013 Feb 26.

PMID:
23443074
15.

Evaluating protein-protein interaction (PPI) networks for diseases pathway, target discovery, and drug-design using 'in silico pharmacology'.

Chakraborty C, Doss C GP, Chen L, Zhu H.

Curr Protein Pept Sci. 2014;15(6):561-71. Review.

PMID:
25059326
16.

Prediction of polypharmacological profiles of drugs by the integration of chemical, side effect, and therapeutic space.

Cheng F, Li W, Wu Z, Wang X, Zhang C, Li J, Liu G, Tang Y.

J Chem Inf Model. 2013 Apr 22;53(4):753-62. doi: 10.1021/ci400010x. Epub 2013 Apr 8.

PMID:
23527559
17.

Gaussian interaction profile kernels for predicting drug-target interaction.

van Laarhoven T, Nabuurs SB, Marchiori E.

Bioinformatics. 2011 Nov 1;27(21):3036-43. doi: 10.1093/bioinformatics/btr500. Epub 2011 Sep 4.

PMID:
21893517
18.

Prediction of body fluids where proteins are secreted into based on protein interaction network.

Hu LL, Huang T, Cai YD, Chou KC.

PLoS One. 2011;6(7):e22989. doi: 10.1371/journal.pone.0022989. Epub 2011 Jul 29.

19.

Large-scale prediction of drug-target interactions using protein sequences and drug topological structures.

Cao DS, Liu S, Xu QS, Lu HM, Huang JH, Hu QN, Liang YZ.

Anal Chim Acta. 2012 Nov 8;752:1-10. doi: 10.1016/j.aca.2012.09.021. Epub 2012 Sep 24.

PMID:
23101647
20.

Drug-target interaction prediction by learning from local information and neighbors.

Mei JP, Kwoh CK, Yang P, Li XL, Zheng J.

Bioinformatics. 2013 Jan 15;29(2):238-45. doi: 10.1093/bioinformatics/bts670. Epub 2012 Nov 17.

PMID:
23162055

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