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Items: 1 to 20 of 92

1.

Alternative splicing and protein interaction data sets.

Talavera D, Robertson DL, Lovell SC.

Nat Biotechnol. 2013 Apr;31(4):292-3. doi: 10.1038/nbt.2540. No abstract available.

PMID:
23563420
2.

Widespread Expansion of Protein Interaction Capabilities by Alternative Splicing.

Yang X, Coulombe-Huntington J, Kang S, Sheynkman GM, Hao T, Richardson A, Sun S, Yang F, Shen YA, Murray RR, Spirohn K, Begg BE, Duran-Frigola M, MacWilliams A, Pevzner SJ, Zhong Q, Trigg SA, Tam S, Ghamsari L, Sahni N, Yi S, Rodriguez MD, Balcha D, Tan G, Costanzo M, Andrews B, Boone C, Zhou XJ, Salehi-Ashtiani K, Charloteaux B, Chen AA, Calderwood MA, Aloy P, Roth FP, Hill DE, Iakoucheva LM, Xia Y, Vidal M.

Cell. 2016 Feb 11;164(4):805-17. doi: 10.1016/j.cell.2016.01.029.

3.

SYSTEMS BIOLOGY. Protein isoforms: more than meets the eye.

Larochelle S.

Nat Methods. 2016 Apr;13(4):291. No abstract available.

PMID:
27482571
4.

Assessing the impact of alternative splicing on domain interactions in the human proteome.

Resch A, Xing Y, Modrek B, Gorlick M, Riley R, Lee C.

J Proteome Res. 2004 Jan-Feb;3(1):76-83.

PMID:
14998166
5.

Protein-based analysis of alternative splicing in the human genome.

Loraine AE, Helt GA, Cline MS, Siani-Rose MA.

Proc IEEE Comput Soc Bioinform Conf. 2002;1:118-24.

PMID:
15838129
6.

Alternative splicing and the proteome.

Cottingham K.

J Proteome Res. 2004 Jan-Feb;3(1):17. No abstract available.

PMID:
14998157
7.

IIIDB: a database for isoform-isoform interactions and isoform network modules.

Tseng YT, Li W, Chen CH, Zhang S, Chen JJ, Zhou X, Liu CC.

BMC Genomics. 2015;16 Suppl 2:S10. doi: 10.1186/1471-2164-16-S2-S10. Epub 2015 Jan 21.

8.

Genome-wide analysis of alternative splicing in Zea mays: landscape and genetic regulation.

Thatcher SR, Zhou W, Leonard A, Wang BB, Beatty M, Zastrow-Hayes G, Zhao X, Baumgarten A, Li B.

Plant Cell. 2014 Sep;26(9):3472-87. doi: 10.1105/tpc.114.130773. Epub 2014 Sep 23.

9.

Protein diversity from alternative splicing: a challenge for bioinformatics and post-genome biology.

Black DL.

Cell. 2000 Oct 27;103(3):367-70. Review. No abstract available.

10.

Proteomics. Tissue-based map of the human proteome.

Uhlén M, Fagerberg L, Hallström BM, Lindskog C, Oksvold P, Mardinoglu A, Sivertsson Å, Kampf C, Sjöstedt E, Asplund A, Olsson I, Edlund K, Lundberg E, Navani S, Szigyarto CA, Odeberg J, Djureinovic D, Takanen JO, Hober S, Alm T, Edqvist PH, Berling H, Tegel H, Mulder J, Rockberg J, Nilsson P, Schwenk JM, Hamsten M, von Feilitzen K, Forsberg M, Persson L, Johansson F, Zwahlen M, von Heijne G, Nielsen J, Pontén F.

Science. 2015 Jan 23;347(6220):1260419. doi: 10.1126/science.1260419.

11.

Relating alternative splicing to proteome complexity and genome evolution.

Xing Y, Lee C.

Adv Exp Med Biol. 2007;623:36-49. Review.

PMID:
18380339
12.

The impact of splicing on protein domain architecture.

Light S, Elofsson A.

Curr Opin Struct Biol. 2013 Jun;23(3):451-8. doi: 10.1016/j.sbi.2013.02.013. Epub 2013 Apr 4. Review.

PMID:
23562110
13.

Seed Dormancy in Arabidopsis Requires Self-Binding Ability of DOG1 Protein and the Presence of Multiple Isoforms Generated by Alternative Splicing.

Nakabayashi K, Bartsch M, Ding J, Soppe WJ.

PLoS Genet. 2015 Dec 18;11(12):e1005737. doi: 10.1371/journal.pgen.1005737. eCollection 2015 Dec.

14.

ASPMF: a new approach for identifying alternative splicing isoforms using peptide mass fingerprinting.

Lee SW, Choi JP, Kim HJ, Hong JM, Hur CG.

Biochem Biophys Res Commun. 2008 Dec 5;377(1):253-6. doi: 10.1016/j.bbrc.2008.09.115. Epub 2008 Oct 1.

PMID:
18835246
15.
16.

AS-ALPS: a database for analyzing the effects of alternative splicing on protein structure, interaction and network in human and mouse.

Shionyu M, Yamaguchi A, Shinoda K, Takahashi K, Go M.

Nucleic Acids Res. 2009 Jan;37(Database issue):D305-9. doi: 10.1093/nar/gkn869. Epub 2008 Nov 10.

18.

The relationship between proteome size, structural disorder and organism complexity.

Schad E, Tompa P, Hegyi H.

Genome Biol. 2011 Dec 19;12(12):R120. doi: 10.1186/gb-2011-12-12-r120.

19.

Nodes occupying central positions in human tissue specific PPI networks are enriched with many splice variants.

Sinha A, Nagarajaram HA.

Proteomics. 2014 Oct;14(20):2242-8. doi: 10.1002/pmic.201400249. Epub 2014 Sep 8.

PMID:
25092398
20.

The novel OCT4 spliced variant OCT4B1 can generate three protein isoforms by alternative splicing into OCT4B.

Gao Y, Wang X, Han J, Xiao Z, Chen B, Su G, Dai J.

J Genet Genomics. 2010 Jul;37(7):461-5. doi: 10.1016/S1673-8527(09)60065-5.

PMID:
20659710

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