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Items: 1 to 20 of 131

1.

A single amino acid substitution alters omnipotent eRF1 of Dileptus to euplotes-type dualpotent eRF1: standard codon usage may be advantageous in raptorial ciliates.

Li Y, Kim OT, Ito K, Saito K, Suzaki T, Harumoto T.

Protist. 2013 May;164(3):440-9. doi: 10.1016/j.protis.2013.02.004. Epub 2013 Apr 2.

PMID:
23562232
2.

[How translation termination factor eRF1 Euplotes does not recognise UGA stop codon].

Lekomtsev SA, Kolosov PM, Frolova LIu, Bidou L, Rousset JP, Kiselev LL.

Mol Biol (Mosk). 2007 Nov-Dec;41(6):1014-22. Russian.

PMID:
18318120
3.

A single amino acid change of translation termination factor eRF1 switches between bipotent and omnipotent stop-codon specificity.

Eliseev B, Kryuchkova P, Alkalaeva E, Frolova L.

Nucleic Acids Res. 2011 Jan;39(2):599-608. doi: 10.1093/nar/gkq759. Epub 2010 Sep 21.

4.

Different modes of stop codon restriction by the Stylonychia and Paramecium eRF1 translation termination factors.

Lekomtsev S, Kolosov P, Bidou L, Frolova L, Rousset JP, Kisselev L.

Proc Natl Acad Sci U S A. 2007 Jun 26;104(26):10824-9. Epub 2007 Jun 15.

5.

Class I release factors in ciliates with variant genetic codes.

Inagaki Y, Doolittle WF.

Nucleic Acids Res. 2001 Feb 15;29(4):921-7.

6.

Ciliates use both variant and universal genetic codes: evidence of omnipotent eRF1s in the class Litostomatea.

Kim OT, Sakurai A, Saito K, Ito K, Ikehara K, Harumoto T.

Gene. 2008 Jul 1;417(1-2):51-8. doi: 10.1016/j.gene.2008.03.018. Epub 2008 Apr 10.

PMID:
18495382
7.

Stop codon recognition in ciliates: Euplotes release factor does not respond to reassigned UGA codon.

Kervestin S, Frolova L, Kisselev L, Jean-Jean O.

EMBO Rep. 2001 Aug;2(8):680-4. Epub 2001 Jul 19.

8.

Newly sequenced eRF1s from ciliates: the diversity of stop codon usage and the molecular surfaces that are important for stop codon interactions.

Kim OT, Yura K, Go N, Harumoto T.

Gene. 2005 Feb 14;346:277-86. Epub 2005 Jan 4. Erratum in: Gene. 2005 Jun 6;352:137.

PMID:
15716103
9.

Distinct eRF3 requirements suggest alternate eRF1 conformations mediate peptide release during eukaryotic translation termination.

Fan-Minogue H, Du M, Pisarev AV, Kallmeyer AK, Salas-Marco J, Keeling KM, Thompson SR, Pestova TV, Bedwell DM.

Mol Cell. 2008 Jun 6;30(5):599-609. doi: 10.1016/j.molcel.2008.03.020.

10.

The ciliate Euplotes octocarinatus expresses two polypeptide release factors of the type eRF1.

Liang A, BrĂ¼nen-Nieweler C, Muramatsu T, Kuchino Y, Beier H, Heckmann K.

Gene. 2001 Jan 10;262(1-2):161-8.

PMID:
11179680
11.
12.

Conversion of omnipotent translation termination factor eRF1 into ciliate-like UGA-only unipotent eRF1.

Seit-Nebi A, Frolova L, Kisselev L.

EMBO Rep. 2002 Sep;3(9):881-6. Epub 2002 Aug 16.

13.

The molecular basis of nuclear genetic code change in ciliates.

Lozupone CA, Knight RD, Landweber LF.

Curr Biol. 2001 Jan 23;11(2):65-74.

14.

Identification of amino acids responsible for stop codon recognition for polypeptide chain release factor.

Xu L, Hao Y, Li C, Shen Q, Chai B, Wang W, Liang A.

Biochem Cell Biol. 2013 Jun;91(3):155-64. doi: 10.1139/bcb-2012-0091. Epub 2013 May 7.

PMID:
23668788
15.

Convergence and constraint in eukaryotic release factor 1 (eRF1) domain 1: the evolution of stop codon specificity.

Inagaki Y, Blouin C, Doolittle WF, Roger AJ.

Nucleic Acids Res. 2002 Jan 15;30(2):532-44.

16.

Distinct paths to stop codon reassignment by the variant-code organisms Tetrahymena and Euplotes.

Salas-Marco J, Fan-Minogue H, Kallmeyer AK, Klobutcher LA, Farabaugh PJ, Bedwell DM.

Mol Cell Biol. 2006 Jan;26(2):438-47.

17.

Functional characterization of polypeptide release factor 1b in the ciliate Euplotes.

Wang Y, Chai B, Wang W, Liang A.

Biosci Rep. 2010 Dec;30(6):425-31. doi: 10.1042/BSR20090154.

PMID:
20136636
18.

Decoding the decoding region: analysis of eukaryotic release factor (eRF1) stop codon-binding residues.

Liang H, Wong JY, Bao Q, Cavalcanti AR, Landweber LF.

J Mol Evol. 2005 Mar;60(3):337-44.

PMID:
15871044
19.

Connection between stop codon reassignment and frequent use of shifty stop frameshifting.

Vallabhaneni H, Fan-Minogue H, Bedwell DM, Farabaugh PJ.

RNA. 2009 May;15(5):889-97. doi: 10.1261/rna.1508109. Epub 2009 Mar 27.

20.

Stop codon recognition in the early-diverged protozoans Giardia lamblia and Trichomonas vaginalis.

Chai B, Li C, Yu J, Hao Y, Guo P, Shen Q.

Mol Biochem Parasitol. 2015 Jul;202(1):15-21. doi: 10.1016/j.molbiopara.2015.08.004. Epub 2015 Aug 24.

PMID:
26310515

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