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Items: 1 to 20 of 87

1.

How many signal peptides are there in bacteria?

Ivankov DN, Payne SH, Galperin MY, Bonissone S, Pevzner PA, Frishman D.

Environ Microbiol. 2013 Apr;15(4):983-90. doi: 10.1111/1462-2920.12105.

2.

Identification of new protein coding sequences and signal peptidase cleavage sites of Helicobacter pylori strain 26695 by proteogenomics.

Müller SA, Findeiß S, Pernitzsch SR, Wissenbach DK, Stadler PF, Hofacker IL, von Bergen M, Kalkhof S.

J Proteomics. 2013 Jun 28;86:27-42. doi: 10.1016/j.jprot.2013.04.036. Epub 2013 May 9.

PMID:
23665149
3.

A proteomic view on genome-based signal peptide predictions.

Antelmann H, Tjalsma H, Voigt B, Ohlmeier S, Bron S, van Dijl JM, Hecker M.

Genome Res. 2001 Sep;11(9):1484-502.

4.

Identification of Treponema pallidum subspecies pallidum genes encoding signal peptides and membrane-spanning sequences using a novel alkaline phosphatase expression vector.

Blanco DR, Giladi M, Champion CI, Haake DA, Chikami GK, Miller JN, Lovett MA.

Mol Microbiol. 1991 Oct;5(10):2405-15.

PMID:
1791755
6.

Evaluation of signal peptide prediction algorithms for identification of mycobacterial signal peptides using sequence data from proteomic methods.

Leversen NA, de Souza GA, Målen H, Prasad S, Jonassen I, Wiker HG.

Microbiology. 2009 Jul;155(Pt 7):2375-83. doi: 10.1099/mic.0.025270-0. Epub 2009 Apr 23.

7.

A combined transmembrane topology and signal peptide prediction method.

Käll L, Krogh A, Sonnhammer EL.

J Mol Biol. 2004 May 14;338(5):1027-36.

PMID:
15111065
8.
9.

Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server.

Käll L, Krogh A, Sonnhammer EL.

Nucleic Acids Res. 2007 Jul;35(Web Server issue):W429-32. Epub 2007 May 5.

10.

Comparing the predicted and observed properties of proteins encoded in the genome of Escherichia coli K-12.

Link AJ, Robison K, Church GM.

Electrophoresis. 1997 Aug;18(8):1259-313. Review.

PMID:
9298646
11.

Genome annotation of Anopheles gambiae using mass spectrometry-derived data.

Kalume DE, Peri S, Reddy R, Zhong J, Okulate M, Kumar N, Pandey A.

BMC Genomics. 2005 Sep 19;6:128.

12.

N-terminomics and proteogenomics, getting off to a good start.

Hartmann EM, Armengaud J.

Proteomics. 2014 Dec;14(23-24):2637-46. doi: 10.1002/pmic.201400157. Epub 2014 Sep 23. Review.

PMID:
25116052
13.
14.

In vitro and in vivo approaches to studying the bacterial signal peptide processing.

Wang P, Dalbey RE.

Methods Mol Biol. 2010;619:21-37. doi: 10.1007/978-1-60327-412-8_2.

PMID:
20419402
15.

A de novo designed signal peptide cleavage cassette functions in vivo.

Nilsson I, von Heijne G.

J Biol Chem. 1991 Feb 25;266(6):3408-10.

16.

Proteomics-based consensus prediction of protein retention in a bacterial membrane.

Tjalsma H, van Dijl JM.

Proteomics. 2005 Nov;5(17):4472-82.

PMID:
16220534
18.

Deep coverage of the Escherichia coli proteome enables the assessment of false discovery rates in simple proteogenomic experiments.

Krug K, Carpy A, Behrends G, Matic K, Soares NC, Macek B.

Mol Cell Proteomics. 2013 Nov;12(11):3420-30. doi: 10.1074/mcp.M113.029165. Epub 2013 Aug 1.

19.

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