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Items: 1 to 20 of 143

1.

Whole-exome targeted sequencing of the uncharacterized pine genome.

Neves LG, Davis JM, Barbazuk WB, Kirst M.

Plant J. 2013 Jul;75(1):146-56. doi: 10.1111/tpj.12193. Epub 2013 May 7.

2.

A high-density gene map of loblolly pine (Pinus taeda L.) based on exome sequence capture genotyping.

Neves LG, Davis JM, Barbazuk WB, Kirst M.

G3 (Bethesda). 2014 Jan 10;4(1):29-37. doi: 10.1534/g3.113.008714.

3.

Decoding the massive genome of loblolly pine using haploid DNA and novel assembly strategies.

Neale DB, Wegrzyn JL, Stevens KA, Zimin AV, Puiu D, Crepeau MW, Cardeno C, Koriabine M, Holtz-Morris AE, Liechty JD, Martínez-García PJ, Vasquez-Gross HA, Lin BY, Zieve JJ, Dougherty WM, Fuentes-Soriano S, Wu LS, Gilbert D, Marçais G, Roberts M, Holt C, Yandell M, Davis JM, Smith KE, Dean JF, Lorenz WW, Whetten RW, Sederoff R, Wheeler N, McGuire PE, Main D, Loopstra CA, Mockaitis K, deJong PJ, Yorke JA, Salzberg SL, Langley CH.

Genome Biol. 2014 Mar 4;15(3):R59. doi: 10.1186/gb-2014-15-3-r59.

4.

Transcriptome sequencing in an ecologically important tree species: assembly, annotation, and marker discovery.

Parchman TL, Geist KS, Grahnen JA, Benkman CW, Buerkle CA.

BMC Genomics. 2010 Mar 16;11:180. doi: 10.1186/1471-2164-11-180.

5.

Establishing gene models from the Pinus pinaster genome using gene capture and BAC sequencing.

Seoane-Zonjic P, Cañas RA, Bautista R, Gómez-Maldonado J, Arrillaga I, Fernández-Pozo N, Claros MG, Cánovas FM, Ávila C.

BMC Genomics. 2016 Feb 27;17:148. doi: 10.1186/s12864-016-2490-z.

6.

Exome genotyping, linkage disequilibrium and population structure in loblolly pine (Pinus taeda L.).

Lu M, Krutovsky KV, Nelson CD, Koralewski TE, Byram TD, Loopstra CA.

BMC Genomics. 2016 Sep 13;17(1):730. doi: 10.1186/s12864-016-3081-8. Erratum in: BMC Genomics. 2016 Nov 4;17 (1):869.

7.

Unique features of the loblolly pine (Pinus taeda L.) megagenome revealed through sequence annotation.

Wegrzyn JL, Liechty JD, Stevens KA, Wu LS, Loopstra CA, Vasquez-Gross HA, Dougherty WM, Lin BY, Zieve JJ, Martínez-García PJ, Holt C, Yandell M, Zimin AV, Yorke JA, Crepeau MW, Puiu D, Salzberg SL, Dejong PJ, Mockaitis K, Main D, Langley CH, Neale DB.

Genetics. 2014 Mar;196(3):891-909. doi: 10.1534/genetics.113.159996.

8.

Sequencing and assembly of the 22-gb loblolly pine genome.

Zimin A, Stevens KA, Crepeau MW, Holtz-Morris A, Koriabine M, Marçais G, Puiu D, Roberts M, Wegrzyn JL, de Jong PJ, Neale DB, Salzberg SL, Yorke JA, Langley CH.

Genetics. 2014 Mar;196(3):875-90. doi: 10.1534/genetics.113.159715.

9.

A Consensus Genetic Map for Pinus taeda and Pinus elliottii and Extent of Linkage Disequilibrium in Two Genotype-Phenotype Discovery Populations of Pinus taeda.

Westbrook JW, Chhatre VE, Wu LS, Chamala S, Neves LG, Muñoz P, Martínez-García PJ, Neale DB, Kirst M, Mockaitis K, Nelson CD, Peter GF, Davis JM, Echt CS.

G3 (Bethesda). 2015 Jun 11;5(8):1685-94. doi: 10.1534/g3.115.019588.

10.

Timber! Felling the loblolly pine genome.

Hamilton JP, Buell CR.

Genome Biol. 2014 Mar 31;15(3):111. doi: 10.1186/gb4170.

11.

Adventures in the enormous: a 1.8 million clone BAC library for the 21.7 Gb genome of loblolly pine.

Magbanua ZV, Ozkan S, Bartlett BD, Chouvarine P, Saski CA, Liston A, Cronn RC, Nelson CD, Peterson DG.

PLoS One. 2011 Jan 21;6(1):e16214. doi: 10.1371/journal.pone.0016214.

12.

Development and implementation of a highly-multiplexed SNP array for genetic mapping in maritime pine and comparative mapping with loblolly pine.

Chancerel E, Lepoittevin C, Le Provost G, Lin YC, Jaramillo-Correa JP, Eckert AJ, Wegrzyn JL, Zelenika D, Boland A, Frigerio JM, Chaumeil P, Garnier-Géré P, Boury C, Grivet D, González-Martínez SC, Rouzé P, Van de Peer Y, Neale DB, Cervera MT, Kremer A, Plomion C.

BMC Genomics. 2011 Jul 18;12:368. doi: 10.1186/1471-2164-12-368.

13.

De novo assembly of maritime pine transcriptome: implications for forest breeding and biotechnology.

Canales J, Bautista R, Label P, Gómez-Maldonado J, Lesur I, Fernández-Pozo N, Rueda-López M, Guerrero-Fernández D, Castro-Rodríguez V, Benzekri H, Cañas RA, Guevara MA, Rodrigues A, Seoane P, Teyssier C, Morel A, Ehrenmann F, Le Provost G, Lalanne C, Noirot C, Klopp C, Reymond I, García-Gutiérrez A, Trontin JF, Lelu-Walter MA, Miguel C, Cervera MT, Cantón FR, Plomion C, Harvengt L, Avila C, Gonzalo Claros M, Cánovas FM.

Plant Biotechnol J. 2014 Apr;12(3):286-99. doi: 10.1111/pbi.12136. Epub 2013 Nov 21.

14.

Anchored reference loci in loblolly pine (Pinus taeda L.) for integrating pine genomics.

Brown GR, Kadel EE 3rd, Bassoni DL, Kiehne KL, Temesgen B, van Buijtenen JP, Sewell MM, Marshall KA, Neale DB.

Genetics. 2001 Oct;159(2):799-809.

15.

Apparent homology of expressed genes from wood-forming tissues of loblolly pine (Pinus taeda L.) with Arabidopsis thaliana.

Kirst M, Johnson AF, Baucom C, Ulrich E, Hubbard K, Staggs R, Paule C, Retzel E, Whetten R, Sederoff R.

Proc Natl Acad Sci U S A. 2003 Jun 10;100(12):7383-8. Epub 2003 May 27.

16.

Exome capture from the spruce and pine giga-genomes.

Suren H, Hodgins KA, Yeaman S, Nurkowski KA, Smets P, Rieseberg LH, Aitken SN, Holliday JA.

Mol Ecol Resour. 2016 Sep;16(5):1136-46. doi: 10.1111/1755-0998.12570. Epub 2016 Aug 5.

PMID:
27428061
17.

Transcriptome characterisation of Pinus tabuliformis and evolution of genes in the Pinus phylogeny.

Niu SH, Li ZX, Yuan HW, Chen XY, Li Y, Li W.

BMC Genomics. 2013 Apr 18;14:263. doi: 10.1186/1471-2164-14-263.

18.

Large-scale statistical analysis of secondary xylem ESTs in pine.

Pavy N, Laroche J, Bousquet J, Mackay J.

Plant Mol Biol. 2005 Jan;57(2):203-24.

PMID:
15821878
19.

Expressed sequence tags from loblolly pine embryos reveal similarities with angiosperm embryogenesis.

Cairney J, Zheng L, Cowels A, Hsiao J, Zismann V, Liu J, Ouyang S, Thibaud-Nissen F, Hamilton J, Childs K, Pullman GS, Zhang Y, Oh T, Buell CR.

Plant Mol Biol. 2006 Nov;62(4-5):485-501. Epub 2006 Sep 26.

PMID:
17001497
20.

A conifer genomics resource of 200,000 spruce (Picea spp.) ESTs and 6,464 high-quality, sequence-finished full-length cDNAs for Sitka spruce (Picea sitchensis).

Ralph SG, Chun HJ, Kolosova N, Cooper D, Oddy C, Ritland CE, Kirkpatrick R, Moore R, Barber S, Holt RA, Jones SJ, Marra MA, Douglas CJ, Ritland K, Bohlmann J.

BMC Genomics. 2008 Oct 14;9:484. doi: 10.1186/1471-2164-9-484.

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