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Items: 1 to 20 of 96

1.

A proteomic characterization of factors enriched at nascent DNA molecules.

Lopez-Contreras AJ, Ruppen I, Nieto-Soler M, Murga M, Rodriguez-Acebes S, Remeseiro S, Rodrigo-Perez S, Rojas AM, Mendez J, Muñoz J, Fernandez-Capetillo O.

Cell Rep. 2013 Apr 25;3(4):1105-16. doi: 10.1016/j.celrep.2013.03.009. Epub 2013 Mar 28.

2.

USP7 is a SUMO deubiquitinase essential for DNA replication.

Lecona E, Rodriguez-Acebes S, Specks J, Lopez-Contreras AJ, Ruppen I, Murga M, Muñoz J, Mendez J, Fernandez-Capetillo O.

Nat Struct Mol Biol. 2016 Apr;23(4):270-7. doi: 10.1038/nsmb.3185. Epub 2016 Mar 7.

3.

The Replication Checkpoint Prevents Two Types of Fork Collapse without Regulating Replisome Stability.

Dungrawala H, Rose KL, Bhat KP, Mohni KN, Glick GG, Couch FB, Cortez D.

Mol Cell. 2015 Sep 17;59(6):998-1010. doi: 10.1016/j.molcel.2015.07.030. Epub 2015 Sep 10.

4.

Identification of proteins at active, stalled, and collapsed replication forks using isolation of proteins on nascent DNA (iPOND) coupled with mass spectrometry.

Sirbu BM, McDonald WH, Dungrawala H, Badu-Nkansah A, Kavanaugh GM, Chen Y, Tabb DL, Cortez D.

J Biol Chem. 2013 Nov 1;288(44):31458-67. doi: 10.1074/jbc.M113.511337. Epub 2013 Sep 18.

5.

A SUMO and ubiquitin code coordinates protein traffic at replication factories.

Lecona E, Fernandez-Capetillo O.

Bioessays. 2016 Dec;38(12):1209-1217. doi: 10.1002/bies.201600129. Epub 2016 Sep 26. Review.

PMID:
27667742
6.

Proteome-wide analysis of SUMO2 targets in response to pathological DNA replication stress in human cells.

Bursomanno S, Beli P, Khan AM, Minocherhomji S, Wagner SA, Bekker-Jensen S, Mailand N, Choudhary C, Hickson ID, Liu Y.

DNA Repair (Amst). 2015 Jan;25:84-96. doi: 10.1016/j.dnarep.2014.10.011. Epub 2014 Nov 25.

PMID:
25497329
7.

Proteomic Analyses of the Eukaryotic Replication Machinery.

Cortez D.

Methods Enzymol. 2017;591:33-53. doi: 10.1016/bs.mie.2017.03.002. Epub 2017 Apr 6.

PMID:
28645376
8.

Regulation of SUMO2 target proteins by the proteasome in human cells exposed to replication stress.

Bursomanno S, McGouran JF, Kessler BM, Hickson ID, Liu Y.

J Proteome Res. 2015 Apr 3;14(4):1687-99. doi: 10.1021/pr500997p. Epub 2015 Mar 19.

PMID:
25748227
9.

Purification of proteins on newly synthesized DNA using iPOND.

Dungrawala H, Cortez D.

Methods Mol Biol. 2015;1228:123-31. doi: 10.1007/978-1-4939-1680-1_10.

10.

Proteomic analyses identify a diverse array of nuclear processes affected by small ubiquitin-like modifier conjugation in Arabidopsis.

Miller MJ, Barrett-Wilt GA, Hua Z, Vierstra RD.

Proc Natl Acad Sci U S A. 2010 Sep 21;107(38):16512-7. doi: 10.1073/pnas.1004181107. Epub 2010 Sep 2.

11.

Analysis of protein dynamics at active, stalled, and collapsed replication forks.

Sirbu BM, Couch FB, Feigerle JT, Bhaskara S, Hiebert SW, Cortez D.

Genes Dev. 2011 Jun 15;25(12):1320-7. doi: 10.1101/gad.2053211.

12.

Proteomic profiling identifies the SIM-associated complex of KSHV-encoded LANA.

Gan J, Wang C, Jin Y, Guo Y, Xu F, Zhu Q, Ding L, Shang H, Wang J, Wei F, Cai Q, Robertson ES.

Proteomics. 2015 Jun;15(12):2023-37. doi: 10.1002/pmic.201400624. Epub 2015 May 26.

PMID:
25894481
13.

Termination of DNA replication forks: "Breaking up is hard to do".

Bailey R, Priego Moreno S, Gambus A.

Nucleus. 2015;6(3):187-96. doi: 10.1080/19491034.2015.1035843. Epub 2015 Apr 2.

14.

System-wide Analysis of SUMOylation Dynamics in Response to Replication Stress Reveals Novel Small Ubiquitin-like Modified Target Proteins and Acceptor Lysines Relevant for Genome Stability.

Xiao Z, Chang JG, Hendriks IA, Sigurðsson JO, Olsen JV, Vertegaal AC.

Mol Cell Proteomics. 2015 May;14(5):1419-34. doi: 10.1074/mcp.O114.044792. Epub 2015 Mar 9.

15.

Proteomic dissection of DNA polymerization.

Beck JL, Urathamakul T, Watt SJ, Sheil MM, Schaeffer PM, Dixon NE.

Expert Rev Proteomics. 2006 Apr;3(2):197-211. Review.

PMID:
16608433
16.

Proteome-wide identification of SUMO2 modification sites.

Tammsalu T, Matic I, Jaffray EG, Ibrahim AFM, Tatham MH, Hay RT.

Sci Signal. 2014 Apr 29;7(323):rs2. doi: 10.1126/scisignal.2005146.

17.

A comprehensive compilation of SUMO proteomics.

Hendriks IA, Vertegaal AC.

Nat Rev Mol Cell Biol. 2016 Sep;17(9):581-95. doi: 10.1038/nrm.2016.81. Epub 2016 Jul 20.

PMID:
27435506
18.

Differential regulation of HIC1 target genes by CtBP and NuRD, via an acetylation/SUMOylation switch, in quiescent versus proliferating cells.

Van Rechem C, Boulay G, Pinte S, Stankovic-Valentin N, Guérardel C, Leprince D.

Mol Cell Biol. 2010 Aug;30(16):4045-59. doi: 10.1128/MCB.00582-09. Epub 2010 Jun 14.

19.
20.

Mapping the SUMOylated landscape.

Eifler K, Vertegaal AC.

FEBS J. 2015 Oct;282(19):3669-80. doi: 10.1111/febs.13378. Epub 2015 Jul 31. Review.

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