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AtWRKY40 and AtWRKY63 modulate the expression of stress-responsive nuclear genes encoding mitochondrial and chloroplast proteins.

Van Aken O, Zhang B, Law S, Narsai R, Whelan J.

Plant Physiol. 2013 May;162(1):254-71. doi: 10.1104/pp.113.215996. Epub 2013 Mar 18.


The Transcription Factor MYB29 Is a Regulator of ALTERNATIVE OXIDASE1a.

Zhang X, Ivanova A, Vandepoele K, Radomiljac J, Van de Velde J, Berkowitz O, Willems P, Xu Y, Ng S, Van Aken O, Duncan O, Zhang B, Storme V, Chan KX, Vaneechoutte D, Pogson BJ, Van Breusegem F, Whelan J, De Clercq I.

Plant Physiol. 2017 Mar;173(3):1824-1843. doi: 10.1104/pp.16.01494. Epub 2017 Feb 6.


The transcription factor ABI4 is a regulator of mitochondrial retrograde expression of ALTERNATIVE OXIDASE1a.

Giraud E, Van Aken O, Ho LH, Whelan J.

Plant Physiol. 2009 Jul;150(3):1286-96. doi: 10.1104/pp.109.139782. Epub 2009 May 29.


Mitochondrial and Chloroplast Stress Responses Are Modulated in Distinct Touch and Chemical Inhibition Phases.

Van Aken O, De Clercq I, Ivanova A, Law SR, Van Breusegem F, Millar AH, Whelan J.

Plant Physiol. 2016 Jul;171(3):2150-65. doi: 10.1104/pp.16.00273. Epub 2016 May 9.


Mutations in the plant-conserved MTERF9 alter chloroplast gene expression, development and tolerance to abiotic stress in Arabidopsis thaliana.

Robles P, Micol JL, Quesada V.

Physiol Plant. 2015 Jun;154(2):297-313. doi: 10.1111/ppl.12307. Epub 2014 Dec 8.


The membrane-bound NAC transcription factor ANAC013 functions in mitochondrial retrograde regulation of the oxidative stress response in Arabidopsis.

De Clercq I, Vermeirssen V, Van Aken O, Vandepoele K, Murcha MW, Law SR, Inzé A, Ng S, Ivanova A, Rombaut D, van de Cotte B, Jaspers P, Van de Peer Y, Kangasjärvi J, Whelan J, Van Breusegem F.

Plant Cell. 2013 Sep;25(9):3472-90. doi: 10.1105/tpc.113.117168. Epub 2013 Sep 17.


The E domains of pentatricopeptide repeat proteins from different organelles are not functionally equivalent for RNA editing.

Chateigner-Boutin AL, Colas des Francs-Small C, Fujii S, Okuda K, Tanz SK, Small I.

Plant J. 2013 Jun;74(6):935-45. doi: 10.1111/tpj.12180. Epub 2013 Apr 25.


Defective chloroplast development inhibits maintenance of normal levels of abscisic acid in a mutant of the Arabidopsis RH3 DEAD-box protein during early post-germination growth.

Lee KH, Park J, Williams DS, Xiong Y, Hwang I, Kang BH.

Plant J. 2013 Mar;73(5):720-32. doi: 10.1111/tpj.12055. Epub 2012 Dec 10.


Targets of the WRKY53 transcription factor and its role during leaf senescence in Arabidopsis.

Miao Y, Laun T, Zimmermann P, Zentgraf U.

Plant Mol Biol. 2004 Aug;55(6):853-67.


Structural and functional analysis of VQ motif-containing proteins in Arabidopsis as interacting proteins of WRKY transcription factors.

Cheng Y, Zhou Y, Yang Y, Chi YJ, Zhou J, Chen JY, Wang F, Fan B, Shi K, Zhou YH, Yu JQ, Chen Z.

Plant Physiol. 2012 Jun;159(2):810-25. doi: 10.1104/pp.112.196816. Epub 2012 Apr 24.


The mitochondrial outer membrane AAA ATPase AtOM66 affects cell death and pathogen resistance in Arabidopsis thaliana.

Zhang B, Van Aken O, Thatcher L, De Clercq I, Duncan O, Law SR, Murcha MW, van der Merwe M, Seifi HS, Carrie C, Cazzonelli C, Radomiljac J, Höfte M, Singh KB, Van Breusegem F, Whelan J.

Plant J. 2014 Nov;80(4):709-27. doi: 10.1111/tpj.12665.


A membrane-bound NAC transcription factor, ANAC017, mediates mitochondrial retrograde signaling in Arabidopsis.

Ng S, Ivanova A, Duncan O, Law SR, Van Aken O, De Clercq I, Wang Y, Carrie C, Xu L, Kmiec B, Walker H, Van Breusegem F, Whelan J, Giraud E.

Plant Cell. 2013 Sep;25(9):3450-71. doi: 10.1105/tpc.113.113985. Epub 2013 Sep 17.


Definition of a core module for the nuclear retrograde response to altered organellar gene expression identifies GLK overexpressors as gun mutants.

Leister D, Kleine T.

Physiol Plant. 2016 Jul;157(3):297-309. doi: 10.1111/ppl.12431. Epub 2016 Apr 4.


RIP1, a member of an Arabidopsis protein family, interacts with the protein RARE1 and broadly affects RNA editing.

Bentolila S, Heller WP, Sun T, Babina AM, Friso G, van Wijk KJ, Hanson MR.

Proc Natl Acad Sci U S A. 2012 May 29;109(22):E1453-61. doi: 10.1073/pnas.1121465109. Epub 2012 May 7.


Downregulation of chloroplast RPS1 negatively modulates nuclear heat-responsive expression of HsfA2 and its target genes in Arabidopsis.

Yu HD, Yang XF, Chen ST, Wang YT, Li JK, Shen Q, Liu XL, Guo FQ.

PLoS Genet. 2012;8(5):e1002669. doi: 10.1371/journal.pgen.1002669. Epub 2012 May 3.


A Member of the Arabidopsis Mitochondrial Transcription Termination Factor Family Is Required for Maturation of Chloroplast Transfer RNAIle(GAU).

Romani I, Manavski N, Morosetti A, Tadini L, Maier S, Kühn K, Ruwe H, Schmitz-Linneweber C, Wanner G, Leister D, Kleine T.

Plant Physiol. 2015 Sep;169(1):627-46. doi: 10.1104/pp.15.00964. Epub 2015 Jul 7.


Identification of regulatory pathways controlling gene expression of stress-responsive mitochondrial proteins in Arabidopsis.

Ho LH, Giraud E, Uggalla V, Lister R, Clifton R, Glen A, Thirkettle-Watts D, Van Aken O, Whelan J.

Plant Physiol. 2008 Aug;147(4):1858-73. doi: 10.1104/pp.108.121384. Epub 2008 Jun 20.


The Arabidopsis chloroplast protein S-RBP11 is involved in oxidative and salt stress responses.

Lee SY, Seok HY, Tarte VN, Woo DH, Le DH, Lee EH, Moon YH.

Plant Cell Rep. 2014 Jun;33(6):837-47. doi: 10.1007/s00299-013-1560-9. Epub 2014 Jan 11.


Induced Genome-Wide Binding of Three Arabidopsis WRKY Transcription Factors during Early MAMP-Triggered Immunity.

Birkenbihl RP, Kracher B, Somssich IE.

Plant Cell. 2017 Jan;29(1):20-38. doi: 10.1105/tpc.16.00681. Epub 2016 Dec 23. Erratum in: Plant Cell. 2017 May;29(5):1175.

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