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Items: 1 to 20 of 90

1.

An imputation approach for oligonucleotide microarrays.

Li M, Wen Y, Lu Q, Fu WJ.

PLoS One. 2013;8(3):e58677. doi: 10.1371/journal.pone.0058677. Epub 2013 Mar 7.

2.

A multi-array multi-SNP genotyping algorithm for Affymetrix SNP microarrays.

Xiao Y, Segal MR, Yang YH, Yeh RF.

Bioinformatics. 2007 Jun 15;23(12):1459-67. Epub 2007 Apr 25.

PMID:
17459966
3.

Spatial normalization improves the quality of genotype calling for Affymetrix SNP 6.0 arrays.

Chai HS, Therneau TM, Bailey KR, Kocher JP.

BMC Bioinformatics. 2010 Jun 29;11:356. doi: 10.1186/1471-2105-11-356.

4.

Statistical analysis of high-density oligonucleotide arrays: a multiplicative noise model.

Sásik R, Calvo E, Corbeil J.

Bioinformatics. 2002 Dec;18(12):1633-40.

PMID:
12490448
5.

Normalization of low-density microarray using external spike-in controls: analysis of macrophage cell lines expression profile.

Fardin P, Moretti S, Biasotti B, Ricciardi A, Bonassi S, Varesio L.

BMC Genomics. 2007 Jan 17;8:17.

6.

Allele frequency calibration for SNP based genotyping of DNA pools: A regression based local-global error fusion method.

Rahman A, Hellicar A, Smith D, Henshall JM.

Comput Biol Med. 2015 Jun;61:48-55. doi: 10.1016/j.compbiomed.2015.03.020. Epub 2015 Mar 26.

PMID:
25863000
7.

A simple optimization can improve the performance of single feature polymorphism detection by Affymetrix expression arrays.

Horiuchi Y, Harushima Y, Fujisawa H, Mochizuki T, Kawakita M, Sakaguchi T, Kurata N.

BMC Genomics. 2010 May 20;11:315. doi: 10.1186/1471-2164-11-315.

8.

Microarray blob-defect removal improves array analysis.

Song JS, Maghsoudi K, Li W, Fox E, Quackenbush J, Shirley Liu X.

Bioinformatics. 2007 Apr 15;23(8):966-71. Epub 2007 Mar 1.

PMID:
17332024
9.

Selection and validation of normalization methods for c-DNA microarrays using within-array replications.

Fan J, Niu Y.

Bioinformatics. 2007 Sep 15;23(18):2391-8. Epub 2007 Jul 27.

PMID:
17660210
10.

Imputation of genotypes with low-density chips and its effect on reliability of direct genomic values in Dutch Holstein cattle.

Mulder HA, Calus MP, Druet T, Schrooten C.

J Dairy Sci. 2012 Feb;95(2):876-89. doi: 10.3168/jds.2011-4490.

PMID:
22281352
11.
12.

Genomic profiling: cDNA arrays and oligoarrays.

Gorreta F, Carbone W, Barzaghi D.

Methods Mol Biol. 2012;823:89-105. doi: 10.1007/978-1-60327-216-2_7. Review.

PMID:
22081341
13.

A probe-treatment-reference (PTR) model for the analysis of oligonucleotide expression microarrays.

Ge H, Cheng C, Li LM.

BMC Bioinformatics. 2008 Apr 14;9:194. doi: 10.1186/1471-2105-9-194.

14.

Genotyping and annotation of Affymetrix SNP arrays.

Lamy P, Andersen CL, Wikman FP, Wiuf C.

Nucleic Acids Res. 2006;34(14):e100. Epub 2006 Aug 9.

15.
16.

An ensemble approach to microarray data-based gene prioritization after missing value imputation.

Hua D, Lai Y.

Bioinformatics. 2007 Mar 15;23(6):747-54. Epub 2007 Jan 31.

PMID:
17267438
17.

Clinical laboratory implementation of cytogenomic microarrays.

South ST, Brothman AR.

Cytogenet Genome Res. 2011;135(3-4):203-11. doi: 10.1159/000331425. Epub 2011 Sep 16. Review.

PMID:
21934287
18.

DNA microarray-based mutation discovery and genotyping.

Gresham D.

Methods Mol Biol. 2011;772:179-91. doi: 10.1007/978-1-61779-228-1_10.

PMID:
22065438
19.

Algorithms for large-scale genotyping microarrays.

Liu WM, Di X, Yang G, Matsuzaki H, Huang J, Mei R, Ryder TB, Webster TA, Dong S, Liu G, Jones KW, Kennedy GC, Kulp D.

Bioinformatics. 2003 Dec 12;19(18):2397-403.

PMID:
14668223
20.

Hot topic: performance of bovine high-density genotyping platforms in Holsteins and Jerseys.

Rincon G, Weber KL, Eenennaam AL, Golden BL, Medrano JF.

J Dairy Sci. 2011 Dec;94(12):6116-21. doi: 10.3168/jds.2011-4764.

PMID:
22118099

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