Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 68

1.

Combined computational design of a zinc-binding site and a protein-protein interaction: one open zinc coordination site was not a robust hotspot for de novo ubiquitin binding.

Der BS, Jha RK, Lewis SM, Thompson PM, Guntas G, Kuhlman B.

Proteins. 2013 Jul;81(7):1245-55. doi: 10.1002/prot.24280. Epub 2013 Apr 20. Erratum in: Proteins. 2013 Sep;81(9):1678. Jha, Raamesh K [corrected to Jha, Ramesh K].

2.

Zinc(II) complexes of ubiquitin: speciation, affinity and binding features.

Arena G, Fattorusso R, Grasso G, Grasso GI, Isernia C, Malgieri G, Milardi D, Rizzarelli E.

Chemistry. 2011 Oct 4;17(41):11596-603. doi: 10.1002/chem.201101364. Epub 2011 Aug 26.

PMID:
21953931
3.

Engineering a zinc binding site into the de novo designed protein DS119 with a βαβ structure.

Zhu C, Zhang C, Liang H, Lai L.

Protein Cell. 2011 Dec;2(12):1006-13. doi: 10.1007/s13238-011-1121-3. Epub 2012 Jan 10.

5.

Probing multimodal ligand binding regions on ubiquitin using nuclear magnetic resonance, chromatography, and molecular dynamics simulations.

Holstein MA, Chung WK, Parimal S, Freed AS, Barquera B, McCallum SA, Cramer SM.

J Chromatogr A. 2012 Mar 16;1229:113-20. doi: 10.1016/j.chroma.2011.12.101. Epub 2012 Jan 9.

PMID:
22281506
6.
7.

Metal-mediated affinity and orientation specificity in a computationally designed protein homodimer.

Der BS, Machius M, Miley MJ, Mills JL, Szyperski T, Kuhlman B.

J Am Chem Soc. 2012 Jan 11;134(1):375-85. doi: 10.1021/ja208015j. Epub 2011 Dec 15.

8.

Zinc binding and dimerization of Streptococcus pyogenes pyrogenic exotoxin C are not essential for T-cell stimulation.

Swietnicki W, Barnie AM, Dyas BK, Ulrich RG.

J Biol Chem. 2003 Mar 14;278(11):9885-95. Epub 2002 Dec 8.

9.

A de novo protein binding pair by computational design and directed evolution.

Karanicolas J, Corn JE, Chen I, Joachimiak LA, Dym O, Peck SH, Albeck S, Unger T, Hu W, Liu G, Delbecq S, Montelione GT, Spiegel CP, Liu DR, Baker D.

Mol Cell. 2011 Apr 22;42(2):250-60. doi: 10.1016/j.molcel.2011.03.010. Epub 2011 Mar 31.

10.

Towards understanding the molecular recognition process in prokaryotic zinc-finger domain.

Russo L, Palmieri M, Caso JV, D'Abrosca G, Diana D, Malgieri G, Baglivo I, Isernia C, Pedone PV, Fattorusso R.

Eur J Med Chem. 2015 Feb 16;91:100-8. doi: 10.1016/j.ejmech.2014.09.040. Epub 2014 Sep 16.

PMID:
25240418
11.
12.

Zn(II) coordination domain mutants of T4 gene 32 protein.

Giedroc DP, Giu HW, Khan R, King GC, Chen K.

Biochemistry. 1992 Jan 28;31(3):765-74.

PMID:
1731933
14.

Conformational selection of ubiquitin quaternary structures driven by zinc ions.

Fermani S, Falini G, Calvaresi M, Bottoni A, Calò V, Mangini V, Arnesano F, Natile G.

Chemistry. 2013 Nov 11;19(46):15480-4. doi: 10.1002/chem.201302229. Epub 2013 Oct 10.

PMID:
24123543
16.

Computational detection of the binding-site hot spot at the remodeled human growth hormone-receptor interface.

Verkhivker GM, Bouzida D, Gehlhaar DK, Rejto PA, Freer ST, Rose PW.

Proteins. 2003 Nov 1;53(2):201-19.

PMID:
14517972
17.

Structure and ubiquitin interactions of the conserved zinc finger domain of Npl4.

Wang B, Alam SL, Meyer HH, Payne M, Stemmler TL, Davis DR, Sundquist WI.

J Biol Chem. 2003 May 30;278(22):20225-34. Epub 2003 Mar 18.

18.

Studying allosteric regulation in metal sensor proteins using computational methods.

Chakravorty DK, Merz KM Jr.

Adv Protein Chem Struct Biol. 2014;96:181-218. doi: 10.1016/bs.apcsb.2014.06.009. Epub 2014 Sep 6. Review.

PMID:
25443958
19.

Mutational analysis and NMR spectroscopy of quail cysteine and glycine-rich protein CRP2 reveal an intrinsic segmental flexibility of LIM domains.

Kloiber K, Weiskirchen R, Kräutler B, Bister K, Konrat R.

J Mol Biol. 1999 Oct 1;292(4):893-908.

PMID:
10525413
20.

Supplemental Content

Support Center