Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 96

1.

Building phylogenetic trees from molecular data with MEGA.

Hall BG.

Mol Biol Evol. 2013 May;30(5):1229-35. doi: 10.1093/molbev/mst012. Epub 2013 Mar 13.

PMID:
23486614
2.

MEGA-CC: computing core of molecular evolutionary genetics analysis program for automated and iterative data analysis.

Kumar S, Stecher G, Peterson D, Tamura K.

Bioinformatics. 2012 Oct 15;28(20):2685-6. doi: 10.1093/bioinformatics/bts507. Epub 2012 Aug 24.

3.

MEGA5: molecular evolutionary genetics analysis using maximum likelihood, evolutionary distance, and maximum parsimony methods.

Tamura K, Peterson D, Peterson N, Stecher G, Nei M, Kumar S.

Mol Biol Evol. 2011 Oct;28(10):2731-9. doi: 10.1093/molbev/msr121. Epub 2011 May 4.

4.

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) software version 4.0.

Tamura K, Dudley J, Nei M, Kumar S.

Mol Biol Evol. 2007 Aug;24(8):1596-9. Epub 2007 May 7.

PMID:
17488738
5.

MEGA: Molecular Evolutionary Genetics Analysis software for microcomputers.

Kumar S, Tamura K, Nei M.

Comput Appl Biosci. 1994 Apr;10(2):189-91.

PMID:
8019868
6.
7.

On the quality of tree-based protein classification.

Lazareva-Ulitsky B, Diemer K, Thomas PD.

Bioinformatics. 2005 May 1;21(9):1876-90. Epub 2005 Jan 12.

PMID:
15647305
8.

Bayesian coestimation of phylogeny and sequence alignment.

Lunter G, Miklós I, Drummond A, Jensen JL, Hein J.

BMC Bioinformatics. 2005 Apr 1;6:83.

9.

MEGA6: Molecular Evolutionary Genetics Analysis version 6.0.

Tamura K, Stecher G, Peterson D, Filipski A, Kumar S.

Mol Biol Evol. 2013 Dec;30(12):2725-9. doi: 10.1093/molbev/mst197. Epub 2013 Oct 16.

10.

SATe-II: very fast and accurate simultaneous estimation of multiple sequence alignments and phylogenetic trees.

Liu K, Warnow TJ, Holder MT, Nelesen SM, Yu J, Stamatakis AP, Linder CR.

Syst Biol. 2012 Jan;61(1):90-106. doi: 10.1093/sysbio/syr095. Epub 2011 Dec 1.

PMID:
22139466
11.

DISTREE: a tool for estimating genetic distances between aligned DNA sequences.

Schäfer J, Schöniger M.

Comput Appl Biosci. 1997 Aug;13(4):445-51.

PMID:
9283760
12.

Vestige: maximum likelihood phylogenetic footprinting.

Wakefield MJ, Maxwell P, Huttley GA.

BMC Bioinformatics. 2005 May 29;6:130.

13.

DPRml: distributed phylogeny reconstruction by maximum likelihood.

Keane TM, Naughton TJ, Travers SA, McInerney JO, McCormack GP.

Bioinformatics. 2005 Apr 1;21(7):969-74. Epub 2004 Oct 28.

PMID:
15513992
14.

Ancestral sequence alignment under optimal conditions.

Hudek AK, Brown DG.

BMC Bioinformatics. 2005 Nov 17;6:273.

15.

Phylogeny.fr: robust phylogenetic analysis for the non-specialist.

Dereeper A, Guignon V, Blanc G, Audic S, Buffet S, Chevenet F, Dufayard JF, Guindon S, Lefort V, Lescot M, Claverie JM, Gascuel O.

Nucleic Acids Res. 2008 Jul 1;36(Web Server issue):W465-9. doi: 10.1093/nar/gkn180. Epub 2008 Apr 19.

16.

TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing.

Schmidt HA, Strimmer K, Vingron M, von Haeseler A.

Bioinformatics. 2002 Mar;18(3):502-4.

PMID:
11934758
17.

Performance comparison between k-tuple distance and four model-based distances in phylogenetic tree reconstruction.

Yang K, Zhang L.

Nucleic Acids Res. 2008 Mar;36(5):e33. doi: 10.1093/nar/gkn075. Epub 2008 Feb 22.

19.

DendroBLAST: approximate phylogenetic trees in the absence of multiple sequence alignments.

Kelly S, Maini PK.

PLoS One. 2013;8(3):e58537. doi: 10.1371/journal.pone.0058537. Epub 2013 Mar 15.

20.

MEGA7: Molecular Evolutionary Genetics Analysis Version 7.0 for Bigger Datasets.

Kumar S, Stecher G, Tamura K.

Mol Biol Evol. 2016 Jul;33(7):1870-4. doi: 10.1093/molbev/msw054. Epub 2016 Mar 22.

PMID:
27004904

Supplemental Content

Support Center