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Items: 1 to 20 of 91

1.

Low-level processing of Illumina Infinium DNA Methylation BeadArrays.

Triche TJ Jr, Weisenberger DJ, Van Den Berg D, Laird PW, Siegmund KD.

Nucleic Acids Res. 2013 Apr;41(7):e90. doi: 10.1093/nar/gkt090. Epub 2013 Mar 9.

2.

Impact of SNPs on methylation readouts by Illumina Infinium HumanMethylation450 BeadChip Array: implications for comparative population studies.

Daca-Roszak P, Pfeifer A, Żebracka-Gala J, Rusinek D, Szybińska A, Jarząb B, Witt M, Ziętkiewicz E.

BMC Genomics. 2015 Nov 25;16:1003. doi: 10.1186/s12864-015-2202-0.

3.

Evaluation of the Infinium Methylation 450K technology.

Dedeurwaerder S, Defrance M, Calonne E, Denis H, Sotiriou C, Fuks F.

Epigenomics. 2011 Dec;3(6):771-84. doi: 10.2217/epi.11.105.

4.

SMETHILLIUM: spatial normalization method for Illumina infinium HumanMethylation BeadChip.

Sabbah C, Mazo G, Paccard C, Reyal F, Hupé P.

Bioinformatics. 2011 Jun 15;27(12):1693-5. doi: 10.1093/bioinformatics/btr187. Epub 2011 Apr 14.

PMID:
21493659
5.

Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray.

Chen YA, Lemire M, Choufani S, Butcher DT, Grafodatskaya D, Zanke BW, Gallinger S, Hudson TJ, Weksberg R.

Epigenetics. 2013 Feb;8(2):203-9. doi: 10.4161/epi.23470. Epub 2013 Jan 11.

6.

ENmix: a novel background correction method for Illumina HumanMethylation450 BeadChip.

Xu Z, Niu L, Li L, Taylor JA.

Nucleic Acids Res. 2016 Feb 18;44(3):e20. doi: 10.1093/nar/gkv907. Epub 2015 Sep 17.

7.

A beta-mixture quantile normalization method for correcting probe design bias in Illumina Infinium 450 k DNA methylation data.

Teschendorff AE, Marabita F, Lechner M, Bartlett T, Tegner J, Gomez-Cabrero D, Beck S.

Bioinformatics. 2013 Jan 15;29(2):189-96. doi: 10.1093/bioinformatics/bts680. Epub 2012 Nov 21.

8.

An evaluation of analysis pipelines for DNA methylation profiling using the Illumina HumanMethylation450 BeadChip platform.

Marabita F, Almgren M, Lindholm ME, Ruhrmann S, Fagerström-Billai F, Jagodic M, Sundberg CJ, Ekström TJ, Teschendorff AE, Tegnér J, Gomez-Cabrero D.

Epigenetics. 2013 Mar;8(3):333-46. doi: 10.4161/epi.24008. Epub 2013 Feb 19.

9.

SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips.

Maksimovic J, Gordon L, Oshlack A.

Genome Biol. 2012 Jun 15;13(6):R44. doi: 10.1186/gb-2012-13-6-r44.

10.

Batch effect correction for genome-wide methylation data with Illumina Infinium platform.

Sun Z, Chai HS, Wu Y, White WM, Donkena KV, Klein CJ, Garovic VD, Therneau TM, Kocher JP.

BMC Med Genomics. 2011 Dec 16;4:84. doi: 10.1186/1755-8794-4-84.

12.

Genome-wide DNA methylation analysis of archival formalin-fixed paraffin-embedded tissue using the Illumina Infinium HumanMethylation27 BeadChip.

Thirlwell C, Eymard M, Feber A, Teschendorff A, Pearce K, Lechner M, Widschwendter M, Beck S.

Methods. 2010 Nov;52(3):248-54. doi: 10.1016/j.ymeth.2010.04.012. Epub 2010 Apr 29. Review.

PMID:
20434562
13.

Predicting CpG methylation levels by integrating Infinium HumanMethylation450 BeadChip array data.

Fan S, Huang K, Ai R, Wang M, Wang W.

Genomics. 2016 Apr;107(4):132-7. doi: 10.1016/j.ygeno.2016.02.005. Epub 2016 Feb 26.

PMID:
26921858
14.

Report on the 2nd Annual Infinium Humanmethylation450 Array Workshop: 15 April 2013 QMUL, London, UK.

Lowe R, Morris T.

Epigenetics. 2013 Oct;8(10):1123-4. doi: 10.4161/epi.26073. Epub 2013 Aug 15.

15.

Considerations for normalization of DNA methylation data by Illumina 450K BeadChip assay in population studies.

Yousefi P, Huen K, Aguilar Schall R, Decker A, Elboudwarej E, Quach H, Barcellos L, Holland N.

Epigenetics. 2013 Nov;8(11):1141-52. doi: 10.4161/epi.26037. Epub 2013 Aug 19.

PMID:
23959097
16.

A systematic assessment of normalization approaches for the Infinium 450K methylation platform.

Wu MC, Joubert BR, Kuan PF, Håberg SE, Nystad W, Peddada SD, London SJ.

Epigenetics. 2014 Feb;9(2):318-29. doi: 10.4161/epi.27119. Epub 2013 Nov 15.

17.

Report on the Infinium 450k methylation array analysis workshop: April 20, 2012 UCL, London, UK.

Morris T, Lowe R.

Epigenetics. 2012 Aug;7(8):961-2. doi: 10.4161/epi.20941. Epub 2012 Jun 22.

18.

Comparison of Methyl-capture Sequencing vs. Infinium 450K methylation array for methylome analysis in clinical samples.

Teh AL, Pan H, Lin X, Lim YI, Patro CP, Cheong CY, Gong M, MacIsaac JL, Kwoh CK, Meaney MJ, Kobor MS, Chong YS, Gluckman PD, Holbrook JD, Karnani N.

Epigenetics. 2016;11(1):36-48. doi: 10.1080/15592294.2015.1132136. Epub 2016 Jan 19.

19.

Determination of DNA methylation levels using Illumina HumanMethylation450 BeadChips.

Carless MA.

Methods Mol Biol. 2015;1288:143-92. doi: 10.1007/978-1-4939-2474-5_10.

PMID:
25827880
20.

Analysis of genome-wide DNA methylation profiles by BeadChip technology.

Lin Q, Wagner W, Zenke M.

Methods Mol Biol. 2013;1049:21-33. doi: 10.1007/978-1-62703-547-7_3.

PMID:
23913206

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