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Items: 1 to 20 of 203

1.

Topological patterns in microRNA-gene regulatory network: studies in colorectal and breast cancer.

Sengupta D, Bandyopadhyay S.

Mol Biosyst. 2013 Jun;9(6):1360-71. doi: 10.1039/c3mb25518b. Epub 2013 Mar 11.

PMID:
23475160
2.

Participation of microRNAs in human interactome: extraction of microRNA-microRNA regulations.

Sengupta D, Bandyopadhyay S.

Mol Biosyst. 2011 Jun;7(6):1966-73. doi: 10.1039/c0mb00347f. Epub 2011 Apr 11.

PMID:
21483898
3.

Inferring coregulation of transcription factors and microRNAs in breast cancer.

Wu JH, Sun YJ, Hsieh PH, Shieh GS.

Gene. 2013 Apr 10;518(1):139-44. doi: 10.1016/j.gene.2012.11.056. Epub 2012 Dec 14.

PMID:
23246694
4.

A novel framework for inferring condition-specific TF and miRNA co-regulation of protein-protein interactions.

Zhang J, Le TD, Liu L, He J, Li J.

Gene. 2016 Feb 10;577(1):55-64. doi: 10.1016/j.gene.2015.11.023. Epub 2015 Nov 27.

PMID:
26611531
5.

Reconstruction of temporal activity of microRNAs from gene expression data in breast cancer cell line.

Jayavelu ND, Bar N.

BMC Genomics. 2015 Dec 18;16:1077. doi: 10.1186/s12864-015-2260-3.

6.

Inter- and intra-combinatorial regulation by transcription factors and microRNAs.

Zhou Y, Ferguson J, Chang JT, Kluger Y.

BMC Genomics. 2007 Oct 30;8:396.

7.

Analyzing miRNA co-expression networks to explore TF-miRNA regulation.

Bandyopadhyay S, Bhattacharyya M.

BMC Bioinformatics. 2009 May 28;10:163. doi: 10.1186/1471-2105-10-163.

8.

Identifying Cancer Subtypes from miRNA-TF-mRNA Regulatory Networks and Expression Data.

Xu T, Le TD, Liu L, Wang R, Sun B, Li J.

PLoS One. 2016 Apr 1;11(4):e0152792. doi: 10.1371/journal.pone.0152792. eCollection 2016.

9.

TransmiR: a transcription factor-microRNA regulation database.

Wang J, Lu M, Qiu C, Cui Q.

Nucleic Acids Res. 2010 Jan;38(Database issue):D119-22. doi: 10.1093/nar/gkp803. Epub 2009 Sep 28.

10.

Functional analysis of microRNA and transcription factor synergistic regulatory network based on identifying regulatory motifs in non-small cell lung cancer.

Li K, Li Z, Zhao N, Xu Y, Liu Y, Zhou Y, Shang D, Qiu F, Zhang R, Chang Z, Xu Y.

BMC Syst Biol. 2013 Nov 7;7:122. doi: 10.1186/1752-0509-7-122.

11.

MicroRNA mediated network and DNA methylation in colorectal cancer.

Li BQ, Yu H, Wang Z, Ding GH, Liu L.

Protein Pept Lett. 2013 Mar;20(3):352-63.

PMID:
22591477
12.

Uncovering MicroRNA and Transcription Factor Mediated Regulatory Networks in Glioblastoma.

Sun J, Gong X, Purow B, Zhao Z.

PLoS Comput Biol. 2012;8(7):e1002488. doi: 10.1371/journal.pcbi.1002488. Epub 2012 Jul 19.

13.

Reconstruction and analysis of transcription factor-miRNA co-regulatory feed-forward loops in human cancers using filter-wrapper feature selection.

Peng C, Wang M, Shen Y, Feng H, Li A.

PLoS One. 2013 Oct 29;8(10):e78197. doi: 10.1371/journal.pone.0078197. eCollection 2013.

14.

An in silico analysis of dynamic changes in microRNA expression profiles in stepwise development of nasopharyngeal carcinoma.

Luo Z, Zhang L, Li Z, Li X, Li G, Yu H, Jiang C, Dai Y, Guo X, Xiang J, Li G.

BMC Med Genomics. 2012 Jan 19;5:3. doi: 10.1186/1755-8794-5-3.

15.

cGRNB: a web server for building combinatorial gene regulatory networks through integrated engineering of seed-matching sequence information and gene expression datasets.

Xu H, Yu H, Tu K, Shi Q, Wei C, Li YY, Li YX.

BMC Syst Biol. 2013;7 Suppl 2:S7. doi: 10.1186/1752-0509-7-S2-S7. Epub 2013 Oct 14.

16.

MicroRNA networks alter to conform to transcription factor networks adding redundancy and reducing the repertoire of target genes for coordinated regulation.

Iwama H, Murao K, Imachi H, Ishida T.

Mol Biol Evol. 2011 Jan;28(1):639-46. doi: 10.1093/molbev/msq231. Epub 2010 Aug 30.

PMID:
20805189
17.

Characterization of regulatory features of housekeeping and tissue-specific regulators within tissue regulatory networks.

Li P, Hua X, Zhang Z, Li J, Wang J.

BMC Syst Biol. 2013 Oct 31;7:112. doi: 10.1186/1752-0509-7-112.

18.

MicroRNA expression profiles in human colorectal cancers with liver metastases.

Lin M, Chen W, Huang J, Gao H, Ye Y, Song Z, Shen X.

Oncol Rep. 2011 Mar;25(3):739-47. doi: 10.3892/or.2010.1112. Epub 2010 Dec 20.

PMID:
21174058
19.

Regulatory coordination of clustered microRNAs based on microRNA-transcription factor regulatory network.

Wang J, Haubrock M, Cao KM, Hua X, Zhang CY, Wingender E, Li J.

BMC Syst Biol. 2011 Dec 16;5:199. doi: 10.1186/1752-0509-5-199.

20.

microRNA evolution in a human transcription factor and microRNA regulatory network.

Qiu C, Wang J, Yao P, Wang E, Cui Q.

BMC Syst Biol. 2010 Jun 29;4:90. doi: 10.1186/1752-0509-4-90.

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