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Items: 1 to 20 of 93

1.

T3_MM: a Markov model effectively classifies bacterial type III secretion signals.

Wang Y, Sun M, Bao H, White AP.

PLoS One. 2013;8(3):e58173. doi: 10.1371/journal.pone.0058173. Epub 2013 Mar 5.

2.

High-accuracy prediction of bacterial type III secreted effectors based on position-specific amino acid composition profiles.

Wang Y, Zhang Q, Sun MA, Guo D.

Bioinformatics. 2011 Mar 15;27(6):777-84. doi: 10.1093/bioinformatics/btr021. Epub 2011 Jan 13.

PMID:
21233168
3.

Effective identification of bacterial type III secretion signals using joint element features.

Wang Y, Sun M, Bao H, Zhang Q, Guo D.

PLoS One. 2013 Apr 4;8(4):e59754. doi: 10.1371/journal.pone.0059754. Print 2013.

4.

Effective identification of Gram-negative bacterial type III secreted effectors using position-specific residue conservation profiles.

Yang X, Guo Y, Luo J, Pu X, Li M.

PLoS One. 2013 Dec 31;8(12):e84439. doi: 10.1371/journal.pone.0084439. eCollection 2013.

5.

Salmonella pathogenicity island 1 (SPI-1) type III secretion of SopD involves N- and C-terminal signals and direct binding to the InvC ATPase.

Boonyom R, Karavolos MH, Bulmer DM, Khan CM.

Microbiology. 2010 Jun;156(Pt 6):1805-14. doi: 10.1099/mic.0.038117-0. Epub 2010 Feb 25.

PMID:
20185511
6.

Prediction of bacterial type IV secreted effectors by C-terminal features.

Wang Y, Wei X, Bao H, Liu SL.

BMC Genomics. 2014 Jan 21;15:50. doi: 10.1186/1471-2164-15-50.

7.

Prediction of type III secretion signals in genomes of gram-negative bacteria.

Löwer M, Schneider G.

PLoS One. 2009 Jun 15;4(6):e5917. doi: 10.1371/journal.pone.0005917. Erratum in: PLoS One. 2009;4(7). doi: 10.1371/annotation/78c8fc32-b1e2-4c87-9c92-d318af980b9b.

8.

Accurate prediction of bacterial type IV secreted effectors using amino acid composition and PSSM profiles.

Zou L, Nan C, Hu F.

Bioinformatics. 2013 Dec 15;29(24):3135-42. doi: 10.1093/bioinformatics/btt554. Epub 2013 Sep 23.

PMID:
24064423
9.

The YscU/FlhB homologue HrcU from Xanthomonas controls type III secretion and translocation of early and late substrates.

Hausner J, Büttner D.

Microbiology. 2014 Mar;160(Pt 3):576-88. doi: 10.1099/mic.0.075176-0. Epub 2014 Jan 14.

PMID:
24425767
10.

Characterization of HrpB2 from Xanthomonas campestris pv. vesicatoria identifies protein regions that are essential for type III secretion pilus formation.

Hartmann N, Schulz S, Lorenz C, Fraas S, Hause G, Büttner D.

Microbiology. 2012 May;158(Pt 5):1334-49. doi: 10.1099/mic.0.057604-0. Epub 2012 Feb 16.

PMID:
22343358
11.

Using weakly conserved motifs hidden in secretion signals to identify type-III effectors from bacterial pathogen genomes.

Dong X, Zhang YJ, Zhang Z.

PLoS One. 2013;8(2):e56632. doi: 10.1371/journal.pone.0056632. Epub 2013 Feb 20.

12.

Identification of novel type III secretion chaperone-substrate complexes of Chlamydia trachomatis.

Pais SV, Milho C, Almeida F, Mota LJ.

PLoS One. 2013;8(2):e56292. doi: 10.1371/journal.pone.0056292. Epub 2013 Feb 19.

13.

The bacterial injection kit: type III secretion systems.

Mota LJ, Cornelis GR.

Ann Med. 2005;37(4):234-49. Review.

PMID:
16019722
14.

Sequence-based prediction of type III secreted proteins.

Arnold R, Brandmaier S, Kleine F, Tischler P, Heinz E, Behrens S, Niinikoski A, Mewes HW, Horn M, Rattei T.

PLoS Pathog. 2009 Apr;5(4):e1000376. doi: 10.1371/journal.ppat.1000376. Epub 2009 Apr 24. Erratum in: PLoS Pathog. 2009 Apr;5(4). doi: 10.1371/annotation/78659a32-7869-4b14-91a6-b301a588d937.

15.

Characterization of the putative type III secretion ATPase CdsN (Cpn0707) of Chlamydophila pneumoniae.

Stone CB, Johnson DL, Bulir DC, Gilchrist JD, Mahony JB.

J Bacteriol. 2008 Oct;190(20):6580-8. doi: 10.1128/JB.00761-08. Epub 2008 Aug 15.

16.

Type III secretion of the Salmonella effector protein SopE is mediated via an N-terminal amino acid signal and not an mRNA sequence.

Karavolos MH, Roe AJ, Wilson M, Henderson J, Lee JJ, Gally DL, Khan CM.

J Bacteriol. 2005 Mar;187(5):1559-67. Erratum in: J Bacteriol. 2005 Aug;187(15):5505. Roe, AJ [added]; Gally, DL [added].

17.

Identification of novel type III secretion effectors in Xanthomonas oryzae pv. oryzae.

Furutani A, Takaoka M, Sanada H, Noguchi Y, Oku T, Tsuno K, Ochiai H, Tsuge S.

Mol Plant Microbe Interact. 2009 Jan;22(1):96-106. doi: 10.1094/MPMI-22-1-0096.

18.

Functional insights into the Shigella type III needle tip IpaD in secretion control and cell contact.

Schiavolin L, Meghraoui A, Cherradi Y, Biskri L, Botteaux A, Allaoui A.

Mol Microbiol. 2013 Apr;88(2):268-82. doi: 10.1111/mmi.12185. Epub 2013 Mar 11.

19.

HpaA from Xanthomonas is a regulator of type III secretion.

Lorenz C, Kirchner O, Egler M, Stuttmann J, Bonas U, Büttner D.

Mol Microbiol. 2008 Jul;69(2):344-60. doi: 10.1111/j.1365-2958.2008.06280.x.

20.

Type III secretion: the bacteria-eukaryotic cell express.

Mota LJ, Sorg I, Cornelis GR.

FEMS Microbiol Lett. 2005 Nov 1;252(1):1-10. Epub 2005 Sep 8. Review.

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