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Items: 1 to 20 of 152

1.

Quantifying the similarity of monotonic trajectories in rough and smooth fitness landscapes.

Lobkovsky AE, Wolf YI, Koonin EV.

Mol Biosyst. 2013 Jul;9(7):1627-31. doi: 10.1039/c3mb25553k. Epub 2013 Mar 4.

2.

Predictability of evolutionary trajectories in fitness landscapes.

Lobkovsky AE, Wolf YI, Koonin EV.

PLoS Comput Biol. 2011 Dec;7(12):e1002302. doi: 10.1371/journal.pcbi.1002302. Epub 2011 Dec 15.

3.

Heterogeneous adaptive trajectories of small populations on complex fitness landscapes.

Rozen DE, Habets MG, Handel A, de Visser JA.

PLoS One. 2008 Mar 5;3(3):e1715. doi: 10.1371/journal.pone.0001715.

4.

The effect of bacterial recombination on adaptation on fitness landscapes with limited peak accessibility.

Moradigaravand D, Engelstädter J.

PLoS Comput Biol. 2012;8(10):e1002735. doi: 10.1371/journal.pcbi.1002735. Epub 2012 Oct 25.

5.

Analysis of epistatic interactions and fitness landscapes using a new geometric approach.

Beerenwinkel N, Pachter L, Sturmfels B, Elena SF, Lenski RE.

BMC Evol Biol. 2007 Apr 13;7:60.

6.

The competition between simple and complex evolutionary trajectories in asexual populations.

Ochs IE, Desai MM.

BMC Evol Biol. 2015 Mar 26;15:55. doi: 10.1186/s12862-015-0334-0.

7.

Evolutionary accessibility of mutational pathways.

Franke J, Klözer A, de Visser JA, Krug J.

PLoS Comput Biol. 2011 Aug;7(8):e1002134. doi: 10.1371/journal.pcbi.1002134. Epub 2011 Aug 18.

8.

Properties of selected mutations and genotypic landscapes under Fisher's geometric model.

Blanquart F, Achaz G, Bataillon T, Tenaillon O.

Evolution. 2014 Dec;68(12):3537-54. doi: 10.1111/evo.12545. Epub 2014 Nov 17.

9.
10.

Adaptation in tunably rugged fitness landscapes: the rough Mount Fuji model.

Neidhart J, Szendro IG, Krug J.

Genetics. 2014 Oct;198(2):699-721. doi: 10.1534/genetics.114.167668. Epub 2014 Aug 13.

11.

Rational evolutionary design: the theory of in vitro protein evolution.

Voigt CA, Kauffman S, Wang ZG.

Adv Protein Chem. 2000;55:79-160. Review.

PMID:
11050933
12.

The NK model of rugged fitness landscapes and its application to maturation of the immune response.

Kauffman SA, Weinberger ED.

J Theor Biol. 1989 Nov 21;141(2):211-45.

PMID:
2632988
13.

Evolutionary origins of transcription factor binding site clusters.

He X, Duque TS, Sinha S.

Mol Biol Evol. 2012 Mar;29(3):1059-70. doi: 10.1093/molbev/msr277. Epub 2011 Nov 10.

14.

Exploring the effect of sex on empirical fitness landscapes.

de Visser JA, Park SC, Krug J.

Am Nat. 2009 Jul;174 Suppl 1:S15-30. doi: 10.1086/599081.

PMID:
19456267
15.

The frequency of fitness peak shifts is increased at expanding range margins due to mutation surfing.

Burton OJ, Travis JM.

Genetics. 2008 Jun;179(2):941-50. doi: 10.1534/genetics.108.087890. Epub 2008 May 27.

16.

Dynamic landscapes: a model of context and contingency in evolution.

Foster DV, Rorick MM, Gesell T, Feeney LM, Foster JG.

J Theor Biol. 2013 Oct 7;334:162-72. doi: 10.1016/j.jtbi.2013.05.030. Epub 2013 Jun 22.

PMID:
23796530
17.

Natural selection fails to optimize mutation rates for long-term adaptation on rugged fitness landscapes.

Clune J, Misevic D, Ofria C, Lenski RE, Elena SF, Sanjuán R.

PLoS Comput Biol. 2008 Sep 26;4(9):e1000187. doi: 10.1371/journal.pcbi.1000187.

18.

Experimental rugged fitness landscape in protein sequence space.

Hayashi Y, Aita T, Toyota H, Husimi Y, Urabe I, Yomo T.

PLoS One. 2006 Dec 20;1:e96.

19.

Deterministic and stochastic regimes of asexual evolution on rugged fitness landscapes.

Jain K, Krug J.

Genetics. 2007 Mar;175(3):1275-88. Epub 2006 Dec 18.

20.

Colloquium papers: Adaptive landscapes and protein evolution.

Carneiro M, Hartl DL.

Proc Natl Acad Sci U S A. 2010 Jan 26;107 Suppl 1:1747-51. doi: 10.1073/pnas.0906192106. Epub 2009 Sep 30. Review.

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