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Items: 1 to 20 of 120

1.

Using FRET to monitor protein-induced DNA bending: the TBP-TATA complex as a model system.

Blair RH, Goodrich JA, Kugel JF.

Methods Mol Biol. 2013;977:203-15. doi: 10.1007/978-1-62703-284-1_16.

PMID:
23436364
2.

TFIIA changes the conformation of the DNA in TBP/TATA complexes and increases their kinetic stability.

Hieb AR, Halsey WA, Betterton MD, Perkins TT, Kugel JF, Goodrich JA.

J Mol Biol. 2007 Sep 21;372(3):619-32. Epub 2007 Jun 29.

PMID:
17681538
3.

Single-molecule fluorescence resonance energy transfer shows uniformity in TATA binding protein-induced DNA bending and heterogeneity in bending kinetics.

Blair RH, Goodrich JA, Kugel JF.

Biochemistry. 2012 Sep 25;51(38):7444-55. doi: 10.1021/bi300491j. Epub 2012 Sep 11.

4.

Using FRET to measure the angle at which a protein bends DNA: TBP binding a TATA box as a model system.

Kugel JF.

Biochem Mol Biol Educ. 2008 Sep;36(5):341-6. doi: 10.1002/bmb.20202.

5.

DNA bends in TATA-binding protein-TATA complexes in solution are DNA sequence-dependent.

Wu J, Parkhurst KM, Powell RM, Brenowitz M, Parkhurst LJ.

J Biol Chem. 2001 May 4;276(18):14614-22. Epub 2001 Jan 26.

6.

Sequence-dependent solution structure and motions of 13 TATA/TBP (TATA-box binding protein) complexes.

Strahs D, Barash D, Qian X, Schlick T.

Biopolymers. 2003 Jun;69(2):216-43.

PMID:
12767124
7.

Signals for TBP/TATA box recognition.

Bareket-Samish A, Cohen I, Haran TE.

J Mol Biol. 2000 Jun 16;299(4):965-77.

PMID:
10843851
8.

The TATA-binding protein core domain in solution variably bends TATA sequences via a three-step binding mechanism.

Delgadillo RF, Whittington JE, Parkhurst LK, Parkhurst LJ.

Biochemistry. 2009 Mar 3;48(8):1801-9. doi: 10.1021/bi8018724.

PMID:
19199812
9.

DNA bending is an important component of site-specific recognition by the TATA binding protein.

Starr DB, Hoopes BC, Hawley DK.

J Mol Biol. 1995 Jul 21;250(4):434-46.

PMID:
7616566
10.

Deformations of promoter DNA bound to carcinogens help interpret effects on TATA-element structure and activity.

Zhang Q, Broyde S, Schlick T.

Philos Trans A Math Phys Eng Sci. 2004 Jul 15;362(1820):1479-96.

12.

The conformational state of the nucleosome entry-exit site modulates TATA box-specific TBP binding.

Hieb AR, Gansen A, Böhm V, Langowski J.

Nucleic Acids Res. 2014 Jul;42(12):7561-76. doi: 10.1093/nar/gku423. Epub 2014 May 14.

13.

Use of fluorescence resonance energy transfer (FRET) in studying protein-induced DNA bending.

Dragan AI, Privalov PL.

Methods Enzymol. 2008;450:185-99. doi: 10.1016/S0076-6879(08)03409-5. Review.

PMID:
19152861
15.

NC2 mobilizes TBP on core promoter TATA boxes.

Schluesche P, Stelzer G, Piaia E, Lamb DC, Meisterernst M.

Nat Struct Mol Biol. 2007 Dec;14(12):1196-201. Epub 2007 Nov 11.

PMID:
17994103
16.

Dynamic simulations of 13 TATA variants refine kinetic hypotheses of sequence/activity relationships.

Qian X, Strahs D, Schlick T.

J Mol Biol. 2001 May 11;308(4):681-703.

PMID:
11350169
17.

DNA sequence-dependent differences in TATA-binding protein-induced DNA bending in solution are highly sensitive to osmolytes.

Wu J, Parkhurst KM, Powell RM, Parkhurst LJ.

J Biol Chem. 2001 May 4;276(18):14623-7. Epub 2001 Jan 26.

18.

Role of indirect readout mechanism in TATA box binding protein-DNA interaction.

Mondal M, Choudhury D, Chakrabarti J, Bhattacharyya D.

J Comput Aided Mol Des. 2015 Mar;29(3):283-95. doi: 10.1007/s10822-014-9828-x. Epub 2015 Jan 10.

PMID:
25575717
19.

Influence of bulky polynuclear carcinogen lesions in a TATA promoter sequence on TATA binding protein-DNA complex formation.

Rechkoblit O, Krzeminsky J, Amin S, Jernström B, Louneva N, Geacintov NE.

Biochemistry. 2001 May 15;40(19):5622-32.

PMID:
11341827
20.

X-ray crystallographic studies of eukaryotic transcription initiation factors.

Burley SK.

Philos Trans R Soc Lond B Biol Sci. 1996 Apr 29;351(1339):483-9. Review.

PMID:
8735270

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