Format
Sort by
Items per page

Send to

Choose Destination

Links from PubMed

Items: 1 to 20 of 122

1.

Evidence for context-dependent complementarity of non-Shine-Dalgarno ribosome binding sites to Escherichia coli rRNA.

Barendt PA, Shah NA, Barendt GA, Kothari PA, Sarkar CA.

ACS Chem Biol. 2013 May 17;8(5):958-66. doi: 10.1021/cb3005726. Epub 2013 Mar 7.

2.

Broad-specificity mRNA-rRNA complementarity in efficient protein translation.

Barendt PA, Shah NA, Barendt GA, Sarkar CA.

PLoS Genet. 2012;8(3):e1002598. doi: 10.1371/journal.pgen.1002598. Epub 2012 Mar 22.

3.

[Extensive complementarity of the Shine-Dalgarno region and 3'-terminal sequence of 16S ribosomal RNA is inefficient for translation in vivo].

Komarova AV, Chufistova LS, Supina EV, Boni IV.

Bioorg Khim. 2001 Jul-Aug;27(4):282-90. Russian.

PMID:
11558262
4.

Local absence of secondary structure permits translation of mRNAs that lack ribosome-binding sites.

Scharff LB, Childs L, Walther D, Bock R.

PLoS Genet. 2011 Jun;7(6):e1002155. doi: 10.1371/journal.pgen.1002155. Epub 2011 Jun 23.

5.

Escherichia coli mRNAs with strong Shine/Dalgarno sequences also contain 5' end sequences complementary to domain # 17 on the 16S ribosomal RNA.

Golshani A, Krogan NJ, Xu J, Pacal M, Yang XC, Ivanov I, Providenti MA, Ganoza MC, Ivanov IG, AbouHaidar MG.

Biochem Biophys Res Commun. 2004 Apr 16;316(4):978-83.

PMID:
15044080
6.

A second putative mRNA binding site on the Escherichia coli ribosome.

Ivanov IG, Alexandrova RA, Dragulev BP, AbouHaidar MG.

Gene. 1995 Jul 4;160(1):75-9.

PMID:
7628721
8.

Naturally occurring adenines within mRNA coding sequences affect ribosome binding and expression in Escherichia coli.

Brock JE, Paz RL, Cottle P, Janssen GR.

J Bacteriol. 2007 Jan;189(2):501-10. Epub 2006 Nov 3.

9.

Analysis of base-pairing potentials between 16S rRNA and 5' UTR for translation initiation in various prokaryotes.

Osada Y, Saito R, Tomita M.

Bioinformatics. 1999 Jul-Aug;15(7-8):578-81.

PMID:
10487865
10.
11.

Inability of Prevotella bryantii to form a functional Shine-Dalgarno interaction reflects unique evolution of ribosome binding sites in Bacteroidetes.

Accetto T, Avguštin G.

PLoS One. 2011;6(8):e22914. doi: 10.1371/journal.pone.0022914. Epub 2011 Aug 12.

12.
13.

Epsilon as an initiator of translation of CAT mRNA in Escherichia coli.

Golshani A, Kolev V, AbouHaidar MG, Ivanov IG.

Biochem Biophys Res Commun. 2000 Jul 5;273(2):528-31.

PMID:
10873639
14.
15.
16.

Protein S1 counteracts the inhibitory effect of the extended Shine-Dalgarno sequence on translation.

Komarova AV, Tchufistova LS, Supina EV, Boni IV.

RNA. 2002 Sep;8(9):1137-47.

17.

rRNA:mRNA pairing alters the length and the symmetry of mRNA-protected fragments in ribosome profiling experiments.

O'Connor PB, Li GW, Weissman JS, Atkins JF, Baranov PV.

Bioinformatics. 2013 Jun 15;29(12):1488-91. doi: 10.1093/bioinformatics/btt184. Epub 2013 Apr 19.

19.

Predicting Shine-Dalgarno sequence locations exposes genome annotation errors.

Starmer J, Stomp A, Vouk M, Bitzer D.

PLoS Comput Biol. 2006 May;2(5):e57. Epub 2006 May 19.

20.

The mRNA binding track in the Escherichia coli ribosome for mRNAs of different sequences.

Bhangu R, Wollenzien P.

Biochemistry. 1992 Jun 30;31(25):5937-44.

PMID:
1610836

Supplemental Content

Support Center