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Items: 1 to 20 of 139

1.

A two-stage mechanism of viral RNA compaction revealed by single molecule fluorescence.

Borodavka A, Tuma R, Stockley PG.

RNA Biol. 2013 Apr;10(4):481-9. doi: 10.4161/rna.23838. Epub 2013 Feb 19.

2.

Packaging signals in two single-stranded RNA viruses imply a conserved assembly mechanism and geometry of the packaged genome.

Dykeman EC, Stockley PG, Twarock R.

J Mol Biol. 2013 Sep 9;425(17):3235-49. doi: 10.1016/j.jmb.2013.06.005. Epub 2013 Jun 11.

PMID:
23763992
3.

Mutually-induced conformational switching of RNA and coat protein underpins efficient assembly of a viral capsid.

Rolfsson Ó, Toropova K, Ranson NA, Stockley PG.

J Mol Biol. 2010 Aug 13;401(2):309-322. doi: 10.1016/j.jmb.2010.05.058.

4.

Evidence that viral RNAs have evolved for efficient, two-stage packaging.

Borodavka A, Tuma R, Stockley PG.

Proc Natl Acad Sci U S A. 2012 Sep 25;109(39):15769-74. Epub 2012 Sep 10.

5.

Viral genomic single-stranded RNA directs the pathway toward a T=3 capsid.

Basnak G, Morton VL, Rolfsson O, Stonehouse NJ, Ashcroft AE, Stockley PG.

J Mol Biol. 2010 Feb 5;395(5):924-36. doi: 10.1016/j.jmb.2009.11.018. Epub 2009 Nov 12.

6.

High efficiency of HIV-1 genomic RNA packaging and heterozygote formation revealed by single virion analysis.

Chen J, Nikolaitchik O, Singh J, Wright A, Bencsics CE, Coffin JM, Ni N, Lockett S, Pathak VK, Hu WS.

Proc Natl Acad Sci U S A. 2009 Aug 11;106(32):13535-40. doi: 10.1073/pnas.0906822106. Epub 2009 Jul 23.

7.

Sequence-specific, RNA-protein interactions overcome electrostatic barriers preventing assembly of satellite tobacco necrosis virus coat protein.

Ford RJ, Barker AM, Bakker SE, Coutts RH, Ranson NA, Phillips SE, Pearson AR, Stockley PG.

J Mol Biol. 2013 Mar 25;425(6):1050-64. doi: 10.1016/j.jmb.2013.01.004. Epub 2013 Jan 11.

8.

The structure of bacteriophage phiCb5 reveals a role of the RNA genome and metal ions in particle stability and assembly.

Plevka P, Kazaks A, Voronkova T, Kotelovica S, Dishlers A, Liljas L, Tars K.

J Mol Biol. 2009 Aug 21;391(3):635-47. doi: 10.1016/j.jmb.2009.06.047. Epub 2009 Jun 23.

PMID:
19559027
9.

In situ structures of the genome and genome-delivery apparatus in a single-stranded RNA virus.

Dai X, Li Z, Lai M, Shu S, Du Y, Zhou ZH, Sun R.

Nature. 2017 Jan 5;541(7635):112-116. doi: 10.1038/nature20589. Epub 2016 Dec 19.

PMID:
27992877
10.

The impact of viral RNA on assembly pathway selection.

Morton VL, Dykeman EC, Stonehouse NJ, Ashcroft AE, Twarock R, Stockley PG.

J Mol Biol. 2010 Aug 13;401(2):298-308. doi: 10.1016/j.jmb.2010.05.059. Epub 2010 Jun 1.

PMID:
20621589
11.

Viral RNAs are unusually compact.

Gopal A, Egecioglu DE, Yoffe AM, Ben-Shaul A, Rao AL, Knobler CM, Gelbart WM.

PLoS One. 2014 Sep 4;9(9):e105875. doi: 10.1371/journal.pone.0105875. eCollection 2014.

12.

The Role of Packaging Sites in Efficient and Specific Virus Assembly.

Perlmutter JD, Hagan MF.

J Mol Biol. 2015 Jul 31;427(15):2451-67. doi: 10.1016/j.jmb.2015.05.008. Epub 2015 May 16.

13.

Degenerate RNA packaging signals in the genome of Satellite Tobacco Necrosis Virus: implications for the assembly of a T=1 capsid.

Bunka DH, Lane SW, Lane CL, Dykeman EC, Ford RJ, Barker AM, Twarock R, Phillips SE, Stockley PG.

J Mol Biol. 2011 Oct 14;413(1):51-65. doi: 10.1016/j.jmb.2011.07.063. Epub 2011 Aug 3.

PMID:
21839093
14.

Dynamic allostery controls coat protein conformer switching during MS2 phage assembly.

Dykeman EC, Stockley PG, Twarock R.

J Mol Biol. 2010 Feb 5;395(5):916-23. doi: 10.1016/j.jmb.2009.11.016. Epub 2009 Nov 12.

PMID:
19913554
15.

Direct Evidence for Packaging Signal-Mediated Assembly of Bacteriophage MS2.

Rolfsson Ó, Middleton S, Manfield IW, White SJ, Fan B, Vaughan R, Ranson NA, Dykeman E, Twarock R, Ford J, Kao CC, Stockley PG.

J Mol Biol. 2016 Jan 29;428(2 Pt B):431-48. doi: 10.1016/j.jmb.2015.11.014. Epub 2015 Dec 1.

16.

Single-molecule fluorescence resonance energy transfer assays reveal heterogeneous folding ensembles in a simple RNA stem-loop.

Gell C, Sabir T, Westwood J, Rashid A, Smith DA, Harris SA, Stockley PG.

J Mol Biol. 2008 Dec 5;384(1):264-78. doi: 10.1016/j.jmb.2008.08.088. Epub 2008 Sep 13.

PMID:
18805425
17.

The three-dimensional structure of genomic RNA in bacteriophage MS2: implications for assembly.

Toropova K, Basnak G, Twarock R, Stockley PG, Ranson NA.

J Mol Biol. 2008 Jan 18;375(3):824-36. Epub 2007 Sep 7.

PMID:
18048058
18.
19.

Alanine scanning of MS2 coat protein reveals protein-phosphate contacts involved in thermodynamic hot spots.

Hobson D, Uhlenbeck OC.

J Mol Biol. 2006 Feb 24;356(3):613-24. Epub 2005 Dec 1.

PMID:
16380130
20.

Differential segregation of nodaviral coat protein and RNA into progeny virions during mixed infection with FHV and NoV.

Gopal R, Venter PA, Schneemann A.

Virology. 2014 Apr;454-455:280-90. doi: 10.1016/j.virol.2014.03.003. Epub 2014 Mar 21.

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