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Items: 1 to 20 of 77

1.

Targeted metabolic engineering guided by computational analysis of single-nucleotide polymorphisms (SNPs).

Udatha DB, Rasmussen S, Sicheritz-Pontén T, Panagiotou G.

Methods Mol Biol. 2013;985:409-28. doi: 10.1007/978-1-62703-299-5_20.

PMID:
23417815
2.

Whole genome sequencing of Saccharomyces cerevisiae: from genotype to phenotype for improved metabolic engineering applications.

Otero JM, Vongsangnak W, Asadollahi MA, Olivares-Hernandes R, Maury J, Farinelli L, Barlocher L, Osterås M, Schalk M, Clark A, Nielsen J.

BMC Genomics. 2010 Dec 22;11:723. doi: 10.1186/1471-2164-11-723.

3.

Reduced polymorphism in domains involved in protein-protein interactions.

Itzhaki Z, Margalit H.

PLoS One. 2012;7(4):e34503. doi: 10.1371/journal.pone.0034503. Epub 2012 Apr 3.

5.

Whole genome resequencing of black Angus and Holstein cattle for SNP and CNV discovery.

Stothard P, Choi JW, Basu U, Sumner-Thomson JM, Meng Y, Liao X, Moore SS.

BMC Genomics. 2011 Nov 15;12:559. doi: 10.1186/1471-2164-12-559.

6.

Mutagenesis Objective Search and Selection Tool (MOSST): an algorithm to predict structure-function related mutations in proteins.

Olivera-Nappa A, Andrews BA, Asenjo JA.

BMC Bioinformatics. 2011 Apr 27;12:122. doi: 10.1186/1471-2105-12-122.

7.

Evolutionary rate in the protein interaction network.

Fraser HB, Hirsh AE, Steinmetz LM, Scharfe C, Feldman MW.

Science. 2002 Apr 26;296(5568):750-2.

8.

Linking genotype and phenotype of Saccharomyces cerevisiae strains reveals metabolic engineering targets and leads to triterpene hyper-producers.

Madsen KM, Udatha GD, Semba S, Otero JM, Koetter P, Nielsen J, Ebizuka Y, Kushiro T, Panagiotou G.

PLoS One. 2011 Mar 18;6(3):e14763. doi: 10.1371/journal.pone.0014763.

9.

Computational refinement of functional single nucleotide polymorphisms associated with ATM gene.

George Priya Doss C, Rajith B.

PLoS One. 2012;7(4):e34573. doi: 10.1371/journal.pone.0034573. Epub 2012 Apr 13.

10.

Saccharomyces Genome Database (SGD) provides tools to identify and analyze sequences from Saccharomyces cerevisiae and related sequences from other organisms.

Christie KR, Weng S, Balakrishnan R, Costanzo MC, Dolinski K, Dwight SS, Engel SR, Feierbach B, Fisk DG, Hirschman JE, Hong EL, Issel-Tarver L, Nash R, Sethuraman A, Starr B, Theesfeld CL, Andrada R, Binkley G, Dong Q, Lane C, Schroeder M, Botstein D, Cherry JM.

Nucleic Acids Res. 2004 Jan 1;32(Database issue):D311-4.

11.

[Computational analysis of human genome polymorphism].

Ramenskiĭ VE, Siuniaev ShR.

Mol Biol (Mosk). 2009 Mar-Apr;43(2):286-94. Review. Russian.

PMID:
19425497
12.

A feedback circuit between transcriptional activation and self-destruction of Gcn4 separates its metabolic and morphogenic response in diploid yeasts.

Herzog B, Streckfuss-Bömeke K, Braus GH.

J Mol Biol. 2011 Jan 28;405(4):909-25. doi: 10.1016/j.jmb.2010.11.033. Epub 2010 Nov 25.

PMID:
21111745
13.

Genome-wide inference of transcription factor-DNA binding specificity in cell regeneration using a combination strategy.

Wang X, Zhang A, Ren W, Chen C, Dong J.

Chem Biol Drug Des. 2012 Nov;80(5):734-44. doi: 10.1111/cbdd.12013. Epub 2012 Sep 10.

PMID:
22863142
14.

Approaches and resources for prediction of the effects of non-synonymous single nucleotide polymorphism on protein function and interactions.

Teng S, Michonova-Alexova E, Alexov E.

Curr Pharm Biotechnol. 2008 Apr;9(2):123-33. Review.

PMID:
18393868
15.

Functional characterization of ribosomal protein L15 from Saccharomyces cerevisiae.

Simoff I, Moradi H, Nygård O.

Curr Genet. 2009 Apr;55(2):111-25. doi: 10.1007/s00294-009-0228-z. Epub 2009 Jan 28.

PMID:
19184027
16.

Dominant gain-of-function mutations in Hsp104p reveal crucial roles for the middle region.

Schirmer EC, Homann OR, Kowal AS, Lindquist S.

Mol Biol Cell. 2004 May;15(5):2061-72. Epub 2004 Feb 20.

17.

Discovery and verification of functional single nucleotide polymorphisms in regulatory genomic regions: current and developing technologies.

Chorley BN, Wang X, Campbell MR, Pittman GS, Noureddine MA, Bell DA.

Mutat Res. 2008 Jul-Aug;659(1-2):147-57. doi: 10.1016/j.mrrev.2008.05.001. Epub 2008 May 4. Review.

18.
19.

Hyper- and hyporesponsive mutant forms of the Saccharomyces cerevisiae Ssy1 amino acid sensor.

Poulsen P, Gaber RF, Kielland-Brandt MC.

Mol Membr Biol. 2008 Feb;25(2):164-76. doi: 10.1080/09687680701771917.

PMID:
18307103
20.

In silico whole-genome screening for cancer-related single-nucleotide polymorphisms located in human mRNA untranslated regions.

Aouacheria A, Navratil V, López-Pérez R, Gutiérrez NC, Churkin A, Barash D, Mouchiroud D, Gautier C.

BMC Genomics. 2007 Jan 3;8:2.

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