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Items: 1 to 20 of 103

1.

Transcription-dependent dynamic supercoiling is a short-range genomic force.

Kouzine F, Gupta A, Baranello L, Wojtowicz D, Ben-Aissa K, Liu J, Przytycka TM, Levens D.

Nat Struct Mol Biol. 2013 Mar;20(3):396-403. doi: 10.1038/nsmb.2517. Epub 2013 Feb 17.

2.

Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures.

Naughton C, Avlonitis N, Corless S, Prendergast JG, Mati IK, Eijk PP, Cockroft SL, Bradley M, Ylstra B, Gilbert N.

Nat Struct Mol Biol. 2013 Mar;20(3):387-95. doi: 10.1038/nsmb.2509. Epub 2013 Feb 17.

3.

[DNA supercoiling and topoisomerases in Escherichia coli].

Gómez-Eichelmann MC, Camacho-Carranza R.

Rev Latinoam Microbiol. 1995 Jul-Sep;37(3):291-304. Review. Spanish.

PMID:
8850348
4.

The functional response of upstream DNA to dynamic supercoiling in vivo.

Kouzine F, Sanford S, Elisha-Feil Z, Levens D.

Nat Struct Mol Biol. 2008 Feb;15(2):146-54. doi: 10.1038/nsmb.1372. Epub 2008 Jan 13.

PMID:
18193062
5.

Control of bacterial DNA supercoiling.

Drlica K.

Mol Microbiol. 1992 Feb;6(4):425-33. Review.

PMID:
1313943
6.

Topoisomerase II binds nucleosome-free DNA and acts redundantly with topoisomerase I to enhance recruitment of RNA Pol II in budding yeast.

Sperling AS, Jeong KS, Kitada T, Grunstein M.

Proc Natl Acad Sci U S A. 2011 Aug 2;108(31):12693-8. doi: 10.1073/pnas.1106834108. Epub 2011 Jul 19.

7.

Bacterial topoisomerases and the control of DNA supercoiling.

Drlica K.

Trends Genet. 1990 Dec;6(12):433-7. Review.

PMID:
1965069
8.
9.

Transcription facilitated genome-wide recruitment of topoisomerase I and DNA gyrase.

Ahmed W, Sala C, Hegde SR, Jha RK, Cole ST, Nagaraja V.

PLoS Genet. 2017 May 2;13(5):e1006754. doi: 10.1371/journal.pgen.1006754. eCollection 2017 May.

10.

Topoisomerase II, not topoisomerase I, is the proficient relaxase of nucleosomal DNA.

Salceda J, Fernández X, Roca J.

EMBO J. 2006 Jun 7;25(11):2575-83. Epub 2006 May 18.

11.
12.

RNA Polymerase II Regulates Topoisomerase 1 Activity to Favor Efficient Transcription.

Baranello L, Wojtowicz D, Cui K, Devaiah BN, Chung HJ, Chan-Salis KY, Guha R, Wilson K, Zhang X, Zhang H, Piotrowski J, Thomas CJ, Singer DS, Pugh BF, Pommier Y, Przytycka TM, Kouzine F, Lewis BA, Zhao K, Levens D.

Cell. 2016 Apr 7;165(2):357-71. doi: 10.1016/j.cell.2016.02.036.

13.

The Coordinated Positive Regulation of Topoisomerase Genes Maintains Topological Homeostasis in Streptomyces coelicolor.

Szafran MJ, Gongerowska M, Gutkowski P, Zakrzewska-Czerwińska J, Jakimowicz D.

J Bacteriol. 2016 Oct 7;198(21):3016-3028. Print 2016 Nov 1.

14.

Roles of topoisomerases in maintaining steady-state DNA supercoiling in Escherichia coli.

Zechiedrich EL, Khodursky AB, Bachellier S, Schneider R, Chen D, Lilley DM, Cozzarelli NR.

J Biol Chem. 2000 Mar 17;275(11):8103-13.

15.

[The effect of DNA supercoiling DNA on nucleosome structure].

Sivolob AV, Khrapunov SN.

Mol Biol (Mosk). 1991 Jan-Feb;25(1):144-52. Russian.

PMID:
1654518
16.

The relative contributions of transcription and translation to plasmid DNA supercoiling in Salmonella typhimurium.

Spirito F, Figueroa-Bossi N, Bossi L.

Mol Microbiol. 1994 Jan;11(1):111-22.

PMID:
7511771
17.

Dependence of transcription-coupled DNA supercoiling on promoter strength in Escherichia coli topoisomerase I deficient strains.

Zhi X, Leng F.

Gene. 2013 Feb 10;514(2):82-90. doi: 10.1016/j.gene.2012.11.011. Epub 2012 Nov 29.

PMID:
23201416
19.

Topoisomerase I regulates open chromatin and controls gene expression in vivo.

Durand-Dubief M, Persson J, Norman U, Hartsuiker E, Ekwall K.

EMBO J. 2010 Jul 7;29(13):2126-34. doi: 10.1038/emboj.2010.109. Epub 2010 Jun 4.

20.

Functional analysis of three topoisomerases that regulate DNA supercoiling levels in Chlamydia.

Orillard E, Tan M.

Mol Microbiol. 2016 Feb;99(3):484-96. doi: 10.1111/mmi.13241. Epub 2015 Nov 13.

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