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Items: 1 to 20 of 108

1.

Thermodynamic analysis of structural transitions during GNNQQNY aggregation.

Osborne KL, Bachmann M, Strodel B.

Proteins. 2013 Jul;81(7):1141-55. doi: 10.1002/prot.24263. Epub 2013 Apr 12.

PMID:
23408546
2.

A multiscale approach to characterize the early aggregation steps of the amyloid-forming peptide GNNQQNY from the yeast prion sup-35.

Nasica-Labouze J, Meli M, Derreumaux P, Colombo G, Mousseau N.

PLoS Comput Biol. 2011 May;7(5):e1002051. doi: 10.1371/journal.pcbi.1002051. Epub 2011 May 19.

3.

Amyloid formation characteristics of GNNQQNY from yeast prion protein Sup35 and its seeding with heterogeneous polypeptides.

Haratake M, Takiguchi T, Masuda N, Yoshida S, Fuchigami T, Nakayama M.

Colloids Surf B Biointerfaces. 2017 Jan 1;149:72-79. doi: 10.1016/j.colsurfb.2016.10.011. Epub 2016 Oct 7.

PMID:
27736724
4.
5.

HRMAS 1H NMR conformational study of the resin-bound amyloid-forming peptide GNNQQNY from the yeast prion Sup35.

Andrey SB, Chan ML, Power WP.

J Phys Chem A. 2010 Mar 18;114(10):3457-65. doi: 10.1021/jp909899w.

PMID:
20155963
6.

A variational model for oligomer-formation process of GNNQQNY peptide from yeast prion protein Sup35.

Qi X, Hong L, Zhang Y.

Biophys J. 2012 Feb 8;102(3):597-605. doi: 10.1016/j.bpj.2011.12.036. Epub 2012 Feb 7.

7.

Structural stability and dynamics of an amyloid-forming peptide GNNQQNY from the yeast prion sup-35.

Zheng J, Ma B, Tsai CJ, Nussinov R.

Biophys J. 2006 Aug 1;91(3):824-33. Epub 2006 May 5.

8.

Temperature dependence of the aggregation kinetics of Sup35 and Ure2p yeast prions.

Sabaté R, Villar-Piqué A, Espargaró A, Ventura S.

Biomacromolecules. 2012 Feb 13;13(2):474-83. doi: 10.1021/bm201527m. Epub 2011 Dec 29.

PMID:
22176525
9.

Characterizing the assembly of the Sup35 yeast prion fragment, GNNQQNY: structural changes accompany a fiber-to-crystal switch.

Marshall KE, Hicks MR, Williams TL, Hoffmann SV, Rodger A, Dafforn TR, Serpell LC.

Biophys J. 2010 Jan 20;98(2):330-8. doi: 10.1016/j.bpj.2009.10.020.

10.

Interplay of sequence, topology and termini charge in determining the stability of the aggregates of GNNQQNY mutants: a molecular dynamics study.

Srivastava A, Balaji PV.

PLoS One. 2014 May 9;9(5):e96660. doi: 10.1371/journal.pone.0096660. eCollection 2014.

11.

Protein misfolding and amyloid formation for the peptide GNNQQNY from yeast prion protein Sup35: simulation by reaction path annealing.

Lipfert J, Franklin J, Wu F, Doniach S.

J Mol Biol. 2005 Jun 10;349(3):648-58. Epub 2005 Apr 13.

PMID:
15896350
12.

The coarse-grained OPEP force field for non-amyloid and amyloid proteins.

Chebaro Y, Pasquali S, Derreumaux P.

J Phys Chem B. 2012 Aug 2;116(30):8741-52. doi: 10.1021/jp301665f. Epub 2012 Jul 16.

PMID:
22742737
13.

Exploring the role of hydration and confinement in the aggregation of amyloidogenic peptides Aβ(16-22) and Sup35(7-13) in AOT reverse micelles.

Martinez AV, Małolepsza E, Rivera E, Lu Q, Straub JE.

J Chem Phys. 2014 Dec 14;141(22):22D530. doi: 10.1063/1.4902550.

14.

[Mechanism and application of molecular self-assembly in Sup35 prion domain of Saccharomyces cerevisiae].

Yin W, He J, Yu Z, Wang J.

Sheng Wu Gong Cheng Xue Bao. 2011 Oct;27(10):1401-7. Review. Chinese.

PMID:
22260056
15.

A molecular dynamics approach to the structural characterization of amyloid aggregation.

Cecchini M, Curcio R, Pappalardo M, Melki R, Caflisch A.

J Mol Biol. 2006 Apr 7;357(4):1306-21. Epub 2006 Jan 26.

PMID:
16483608
16.

Natural polyphenols as inhibitors of amyloid aggregation. Molecular dynamics study of GNNQQNY heptapeptide decamer.

Berhanu WM, Masunov AE.

Biophys Chem. 2010 Jun;149(1-2):12-21. doi: 10.1016/j.bpc.2010.03.003. Epub 2010 Mar 18.

PMID:
20456856
17.
18.

Role of monomer arrangement in the amyloid self-assembly.

Portillo A, Hashemi M, Zhang Y, Breydo L, Uversky VN, Lyubchenko YL.

Biochim Biophys Acta. 2015 Mar;1854(3):218-28. doi: 10.1016/j.bbapap.2014.12.009. Epub 2014 Dec 24.

19.

Thermodynamics and kinetics of aggregation for the GNNQQNY peptide.

Strodel B, Whittleston CS, Wales DJ.

J Am Chem Soc. 2007 Dec 26;129(51):16005-14. Epub 2007 Dec 4.

PMID:
18052168
20.

Stability of single sheet GNNQQNY aggregates analyzed by replica exchange molecular dynamics: antiparallel versus parallel association.

Vitagliano L, Esposito L, Pedone C, De Simone A.

Biochem Biophys Res Commun. 2008 Dec 26;377(4):1036-41. doi: 10.1016/j.bbrc.2008.10.039. Epub 2008 Oct 18.

PMID:
18938138

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