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Items: 1 to 20 of 103

1.

Role of ion valence in the submillisecond collapse and folding of a small RNA domain.

Pabit SA, Sutton JL, Chen H, Pollack L.

Biochemistry. 2013 Mar 5;52(9):1539-46. doi: 10.1021/bi3016636. Epub 2013 Feb 21.

2.

Principles of RNA compaction: insights from the equilibrium folding pathway of the P4-P6 RNA domain in monovalent cations.

Takamoto K, Das R, He Q, Doniach S, Brenowitz M, Herschlag D, Chance MR.

J Mol Biol. 2004 Nov 5;343(5):1195-206.

PMID:
15491606
3.

Linkage of monovalent and divalent ion binding in the folding of the P4-P6 domain of the Tetrahymena ribozyme.

Uchida T, He Q, Ralston CY, Brenowitz M, Chance MR.

Biochemistry. 2002 May 7;41(18):5799-806.

PMID:
11980483
4.

Role of counterion condensation in folding of the Tetrahymena ribozyme. II. Counterion-dependence of folding kinetics.

Heilman-Miller SL, Pan J, Thirumalai D, Woodson SA.

J Mol Biol. 2001 May 25;309(1):57-68.

PMID:
11491301
5.

The fastest global events in RNA folding: electrostatic relaxation and tertiary collapse of the Tetrahymena ribozyme.

Das R, Kwok LW, Millett IS, Bai Y, Mills TT, Jacob J, Maskel GS, Seifert S, Mochrie SG, Thiyagarajan P, Doniach S, Pollack L, Herschlag D.

J Mol Biol. 2003 Sep 12;332(2):311-9.

PMID:
12948483
6.

Small angle X-ray scattering reveals a compact intermediate in RNA folding.

Russell R, Millett IS, Doniach S, Herschlag D.

Nat Struct Biol. 2000 May;7(5):367-70.

PMID:
10802731
7.

Low specificity of metal ion binding in the metal ion core of a folded RNA.

Travers KJ, Boyd N, Herschlag D.

RNA. 2007 Aug;13(8):1205-13. Epub 2007 Jul 6.

8.

Folding mechanism of the Tetrahymena ribozyme P4-P6 domain.

Deras ML, Brenowitz M, Ralston CY, Chance MR, Woodson SA.

Biochemistry. 2000 Sep 12;39(36):10975-85.

PMID:
10998234
9.

Metal ion dependence of cooperative collapse transitions in RNA.

Moghaddam S, Caliskan G, Chauhan S, Hyeon C, Briber RM, Thirumalai D, Woodson SA.

J Mol Biol. 2009 Oct 30;393(3):753-64. doi: 10.1016/j.jmb.2009.08.044. Epub 2009 Aug 25.

10.

Monovalent ion-mediated folding of the Tetrahymena thermophila ribozyme.

Shcherbakova I, Gupta S, Chance MR, Brenowitz M.

J Mol Biol. 2004 Oct 1;342(5):1431-42.

PMID:
15364572
11.

Counterion charge density determines the position and plasticity of RNA folding transition states.

Koculi E, Thirumalai D, Woodson SA.

J Mol Biol. 2006 Jun 2;359(2):446-54. Epub 2006 Mar 30.

PMID:
16626736
12.
13.

Enhanced specificity against misfolding in a thermostable mutant of the Tetrahymena ribozyme.

Wan Y, Russell R.

Biochemistry. 2011 Feb 8;50(5):864-74. doi: 10.1021/bi101467q. Epub 2011 Jan 11.

14.

Two major tertiary folding transitions of the Tetrahymena catalytic RNA.

Laggerbauer B, Murphy FL, Cech TR.

EMBO J. 1994 Jun 1;13(11):2669-76.

15.

An optimal Mg(2+) concentration for kinetic folding of the tetrahymena ribozyme.

Rook MS, Treiber DK, Williamson JR.

Proc Natl Acad Sci U S A. 1999 Oct 26;96(22):12471-6.

16.

Hinge stiffness is a barrier to RNA folding.

Schlatterer JC, Kwok LW, Lamb JS, Park HY, Andresen K, Brenowitz M, Pollack L.

J Mol Biol. 2008 Jun 13;379(4):859-70. doi: 10.1016/j.jmb.2008.04.013. Epub 2008 Apr 10.

17.

Role of counterion condensation in folding of the Tetrahymena ribozyme. I. Equilibrium stabilization by cations.

Heilman-Miller SL, Thirumalai D, Woodson SA.

J Mol Biol. 2001 Mar 9;306(5):1157-66.

PMID:
11237624
18.

Monovalent cations mediate formation of native tertiary structure of the Tetrahymena thermophila ribozyme.

Takamoto K, He Q, Morris S, Chance MR, Brenowitz M.

Nat Struct Biol. 2002 Dec;9(12):928-33.

PMID:
12434149
19.

Multiple monovalent ion-dependent pathways for the folding of the L-21 Tetrahymena thermophila ribozyme.

Uchida T, Takamoto K, He Q, Chance MR, Brenowitz M.

J Mol Biol. 2003 Apr 25;328(2):463-78.

PMID:
12691754
20.

Fast folding of a ribozyme by stabilizing core interactions: evidence for multiple folding pathways in RNA.

Pan J, Deras ML, Woodson SA.

J Mol Biol. 2000 Feb 11;296(1):133-44.

PMID:
10656822

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